Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.7e-28 128.6 64 100.0
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.7e-28 128.6 64 100.0
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 4.9e-28 127.1 64 98.4
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 4.9e-28 127.1 64 98.4
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 4.9e-28 127.1 64 98.4
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 2.9e-25 117.9 64 90.6
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.6e-21 104.8 64 81.2
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 4.1e-19 97.4 61 78.7
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 7.8e-18 93.2 64 70.3
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 3.3e-16 87.8 61 67.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 3.3e-16 87.8 64 70.3
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 7.3e-16 86.7 59 66.1
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.2e-15 85.9 59 67.8
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.6e-15 85.5 58 69.0
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.6e-15 85.5 58 67.2
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.8e-15 84.7 59 67.8
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.8e-15 84.7 59 67.8
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.4e-14 82.4 58 67.2
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 2.3e-14 81.6 59 64.4
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.0e-14 80.9 59 64.4
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 5.2e-14 80.5 58 63.8
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 6.8e-14 80.1 59 64.4
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.2e-13 79.3 59 61.0
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.5e-13 79.0 57 64.9
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.6e-13 78.2 58 62.1
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 7.5e-13 76.6 59 64.4
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 8.3e-12 73.2 57 59.6
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.6e-10 68.9 53 56.6
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 4.6e-10 67.4 54 57.4
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 4.6e-10 67.4 53 56.6
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 4.6e-10 67.4 53 56.6
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 52.8
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.0e-09 66.2 59 54.2
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.0e-09 66.2 55 54.5
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 54.7
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.3e-09 65.9 59 54.2
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.3e-09 65.9 55 52.7
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.3e-09 65.9 55 49.1
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.3e-09 65.1 53 56.6
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.3e-09 65.1 55 52.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.3e-09 65.1 59 54.2
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 2.3e-09 65.1 59 50.8
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 3.0e-09 64.7 52 59.6
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 3.9e-09 64.3 55 54.5
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 52.8
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 56.6
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 52.8
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 5.0e-09 63.9 58 53.4
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 6.6e-09 63.5 56 50.0
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 6.6e-09 63.5 55 52.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 8.6e-09 63.2 53 52.8
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 8.6e-09 63.2 59 52.5
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 1.1e-08 62.8 53 52.8
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 1.1e-08 62.8 53 52.8
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.5e-08 62.4 55 49.1
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 1.5e-08 62.4 55 47.3
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 49.1
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 49.1
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 49.1
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 49.1
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 49.1
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 5.6e-08 60.5 55 43.6
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 7.3e-08 60.1 52 53.8
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 7.3e-08 60.1 55 49.1
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 7.3e-08 60.1 55 47.3
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 7.3e-08 60.1 55 45.5
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 7.3e-08 60.1 58 48.3
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 7.3e-08 60.1 44 61.4
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 9.5e-08 59.7 48 62.5
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.2e-07 59.3 56 51.8
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.2e-07 59.3 58 48.3
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.2e-07 59.3 55 43.6
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.1e-07 58.5 55 45.5
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 45.3
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 43.4
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 2.8e-07 58.2 50 60.0
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 2.8e-07 58.2 44 61.4
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.8e-07 58.2 55 50.9
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.6e-07 57.8 53 47.2
Carub.0003s1092 Capsella rubella HOM05D007252 ORTHO05D009074 8.1e-07 56.6 64 50.0
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 8.1e-07 56.6 53 45.3
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.1e-06 56.2 53 45.3
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 1.1e-06 56.2 55 41.8
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.8e-06 55.5 59 50.8
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 2.3e-06 55.1 52 44.2
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 2.3e-06 55.1 55 40.0
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 3.1e-06 54.7 54 48.1
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 4.0e-06 54.3 49 49.0
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 5.2e-06 53.9 44 59.1
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 8.9e-06 53.1 53 43.4


User provided reference genes

Program Settings