Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 2.6e-74 282.0 143 100.0
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 2.7e-71 271.9 140 98.6
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 2.1e-55 219.2 132 87.9
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 2.1e-55 219.2 132 87.9
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 9.4e-48 193.7 116 88.8
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-42 176.8 178 60.7
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-42 176.8 178 60.7
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-42 176.8 178 60.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.2e-42 176.8 178 60.7
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.2e-42 176.8 178 60.7
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 3.5e-42 175.3 178 60.7
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 4.5e-42 174.9 178 59.6
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 8.6e-41 170.6 178 57.9
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 7.2e-40 167.5 178 57.3
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 9.5e-40 167.2 178 57.3
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 4.7e-39 164.9 178 55.6
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 3.0e-38 162.2 178 55.6
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 3.0e-38 162.2 178 55.1
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 6.8e-38 161.0 178 55.6
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 2.2e-36 156.0 178 52.2
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 2.8e-36 155.6 178 51.1
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 2.4e-35 152.5 178 51.7
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 2.4e-35 152.5 178 50.0
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 4.1e-35 151.8 178 48.9
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 4.1e-35 151.8 178 48.9
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 4.1e-35 151.8 178 50.6
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 5.4e-35 151.4 178 50.6
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 7.0e-35 151.0 140 57.9
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 7.0e-35 151.0 178 50.0
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 7.0e-35 151.0 178 50.0
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 9.2e-35 150.6 178 49.4
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 9.2e-35 150.6 178 50.6
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 9.2e-35 150.6 178 50.0
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 9.2e-35 150.6 178 49.4
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 1.2e-34 150.2 178 48.9
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.2e-34 150.2 178 50.0
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.6e-34 149.8 178 49.4
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.0e-34 149.4 178 50.0
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 2.0e-34 149.4 178 49.4
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 2.7e-34 149.1 178 50.6
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 3.5e-34 148.7 178 50.0
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 4.5e-34 148.3 178 49.4
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 4.5e-34 148.3 178 48.9
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 4.5e-34 148.3 178 49.4
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 4.5e-34 148.3 178 49.4
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 5.9e-34 147.9 178 48.9
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.0e-33 147.1 178 48.9
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.3e-33 146.0 178 48.3
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.3e-33 146.0 178 48.3
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 2.3e-33 146.0 178 48.3
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 2.9e-33 145.6 178 48.3
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.8e-33 145.2 178 48.9
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.8e-33 145.2 178 48.9
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.8e-33 145.2 178 48.9
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.8e-33 145.2 178 48.9
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.8e-33 145.2 178 48.3
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.8e-33 145.2 178 48.3
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 5.0e-33 144.8 178 48.3
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 5.0e-33 144.8 178 47.2
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 6.6e-33 144.4 178 47.8
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.1e-32 143.7 178 47.2
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.1e-32 143.7 178 48.3
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.1e-32 143.7 178 47.2
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 1.5e-32 143.3 178 47.2
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.9e-32 142.9 187 46.0
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.9e-32 142.9 187 46.0
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.9e-32 142.9 178 47.8
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 4.3e-32 141.7 178 48.3
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 9.5e-32 140.6 178 46.1
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 9.5e-32 140.6 74 94.6
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.8e-31 139.0 178 46.6
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 3.6e-31 138.7 178 45.5
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 4.7e-31 138.3 170 48.2
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 6.1e-31 137.9 178 47.8
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.0e-30 137.1 178 46.1
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.0e-30 137.1 172 48.8
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.4e-30 136.7 172 48.8
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 5.2e-30 134.8 170 47.6
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 8.9e-30 134.0 178 46.1
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 3.4e-29 132.1 174 46.0
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 1.7e-28 129.8 178 44.9
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 2.9e-28 129.0 218 39.4
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 2.9e-28 129.0 71 87.3
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.9e-28 129.0 71 87.3
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 4.9e-28 128.3 71 87.3
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 6.4e-28 127.9 178 42.7
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 6.4e-28 127.9 178 42.7
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 2.4e-27 125.9 71 84.5
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 4.1e-27 125.2 71 84.5
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 5.4e-27 124.8 71 84.5
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 5.4e-27 124.8 71 83.1
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.2e-26 123.6 71 83.1
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.2e-26 123.6 71 84.5
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.2e-26 123.6 178 43.8
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.7e-26 122.5 178 40.4
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 4.6e-26 121.7 64 93.8
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.6e-26 121.7 71 83.1
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 4.6e-26 121.7 71 83.1
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 7.8e-26 120.9 71 80.3
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 1.3e-25 120.2 71 80.3
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 1.7e-25 119.8 71 81.7
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.3e-25 119.4 71 81.7
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.3e-25 119.4 71 81.7
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 5.0e-25 118.2 71 78.9
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 6.8e-22 107.8 71 70.4
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 2.0e-21 106.3 178 38.8
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 4.4e-21 105.1 178 38.8
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 5.8e-21 104.8 178 37.6
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 7.5e-21 104.4 178 38.8
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.3e-20 103.6 180 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 1.3e-17 93.6 178 36.5
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.8e-15 85.9 178 33.1
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 2.8e-15 85.9 62 62.9


User provided reference genes

Program Settings