Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 3.4e-135 485.0 238 100.0
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 7.9e-132 473.8 239 97.9
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 3.3e-130 468.4 239 96.7
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 3.0e-123 445.3 243 89.7
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 3.7e-113 411.8 245 83.3
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 4.1e-112 408.3 245 82.4
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 1.2e-111 406.8 245 82.4
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 1.3e-110 403.3 245 81.2
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 9.4e-109 397.1 236 81.4
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 1.9e-106 389.4 245 79.2
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 3.9e-91 338.6 240 70.4
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 6.5e-86 321.2 239 64.9
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 4.8e-73 278.5 185 77.8
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 6.6e-70 268.1 192 66.7
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.1e-69 267.3 180 70.0
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.5e-69 266.9 182 69.8
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 2.5e-69 266.2 212 60.4
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 4.2e-69 265.4 193 66.3
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.6e-68 262.3 182 67.6
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 4.7e-68 261.9 185 65.9
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 4.7e-68 261.9 243 56.0
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 6.1e-68 261.5 193 63.2
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 2.3e-67 259.6 182 68.1
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 3.0e-67 259.2 242 56.6
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 7.5e-66 254.6 245 53.1
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 1.3e-65 253.8 206 61.2
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 1.3e-65 253.8 229 53.7
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 2.8e-65 252.7 210 58.6
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 3.7e-65 252.3 245 52.7
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 3.7e-65 252.3 182 65.4
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 8.3e-65 251.1 200 59.5
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.1e-64 250.8 179 64.2
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 1.1e-64 250.8 185 63.2
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 2.4e-64 249.6 228 55.7
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.4e-64 249.6 179 64.2
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.4e-64 249.6 179 64.2
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 2.4e-64 249.6 210 59.0
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 5.4e-64 248.4 194 63.4
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 5.4e-64 248.4 229 53.7
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 5.4e-64 248.4 184 65.2
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 9.2e-64 247.7 200 60.5
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 1.2e-63 247.3 183 61.2
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 2.0e-63 246.5 192 62.0
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 2.0e-63 246.5 211 58.8
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 2.0e-63 246.5 180 66.7
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.7e-63 246.1 181 65.7
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 2.7e-63 246.1 177 62.1
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 2.7e-63 246.1 231 54.5
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 2.7e-63 246.1 191 61.3
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 2.7e-63 246.1 184 62.0
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 3.5e-63 245.7 183 61.2
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 4.5e-63 245.4 192 60.4
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 5.9e-63 245.0 205 57.6
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 7.8e-63 244.6 191 59.7
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 7.8e-63 244.6 193 59.1
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 7.8e-63 244.6 209 57.9
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 1.0e-62 244.2 195 59.0
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 1.3e-62 243.8 192 62.0
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 1.7e-62 243.4 224 54.5
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 2.3e-62 243.0 182 62.1
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 2.9e-62 242.7 238 51.3
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 3.8e-62 242.3 190 59.5
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 3.8e-62 242.3 204 58.3
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 6.6e-62 241.5 181 63.0
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 8.6e-62 241.1 187 61.5
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 8.6e-62 241.1 236 51.3
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 8.6e-62 241.1 179 62.0
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 1.1e-61 240.7 176 61.4
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 1.1e-61 240.7 245 51.4
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.9e-61 240.0 182 61.0
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.5e-61 239.6 179 65.4
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 3.3e-61 239.2 179 62.6
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 3.3e-61 239.2 179 62.6
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 4.3e-61 238.8 184 60.3
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 4.3e-61 238.8 181 63.0
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 4.3e-61 238.8 182 61.5
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 5.6e-61 238.4 192 59.4
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 7.3e-61 238.0 184 58.7
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 9.5e-61 237.7 206 56.3
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 9.5e-61 237.7 180 61.7
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 1.2e-60 237.3 193 58.0
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 1.6e-60 236.9 184 58.7
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 1.4e-59 233.8 213 54.9
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.8e-59 233.4 182 60.4
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 1.8e-59 233.4 183 61.7
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 2.3e-59 233.0 165 63.0
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 2.3e-59 233.0 183 61.2
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.5e-58 230.3 187 58.3
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 1.5e-58 230.3 169 59.8
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.6e-58 229.6 187 58.3
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 3.4e-58 229.2 206 56.3
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 9.8e-58 227.6 206 54.9
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 3.7e-57 225.7 179 59.2
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 6.4e-57 224.9 189 58.2
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 8.3e-57 224.6 179 57.5
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.1e-56 224.2 192 54.7
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 2.4e-56 223.0 161 64.0
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 3.2e-56 222.6 179 60.3
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 4.1e-56 222.2 195 57.4
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 9.2e-56 221.1 177 57.6
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 1.8e-51 206.8 103 90.3
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 3.4e-50 202.6 182 55.5
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 4.4e-50 202.2 103 87.4
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 7.5e-50 201.4 170 57.1
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 9.8e-50 201.1 187 51.9
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 2.2e-49 199.9 174 58.0
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 3.7e-49 199.1 192 52.6
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 4.9e-49 198.7 166 59.6
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 4.9e-49 198.7 174 57.5
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 6.4e-49 198.4 186 53.8
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 9.2e-48 194.5 181 55.2
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.1e-47 193.4 139 60.4
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.2e-44 184.1 170 53.5
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 8.1e-44 181.4 166 49.4
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 3.4e-42 176.0 145 60.7
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 1.1e-37 161.0 156 51.3
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 4.7e-36 155.6 123 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 6.2e-36 155.2 159 45.9
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 1.2e-34 151.0 103 65.0
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 2.0e-34 150.2 103 63.1
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 1.4e-27 127.5 79 82.3
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 4.4e-26 122.5 105 53.3
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 9.9e-26 121.3 76 67.1
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 1.0e-22 111.3 91 60.4
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.1e-19 99.8 114 47.4
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 2.2e-17 93.6 101 46.5
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 3.8e-17 92.8 119 39.5
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 3.2e-16 89.7 122 39.3
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 3.2e-16 89.7 81 51.9
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 4.6e-15 85.9 122 42.6
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 2.3e-14 83.6 122 35.2
BraA03t12780Z Brassica rapa HOM05D005668 ORTHO05D007082 3.9e-14 82.8 41 90.2
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 5.1e-14 82.4 175 32.0
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.5e-13 80.9 118 33.9
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 4.3e-13 79.3 121 31.4
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 1.6e-12 77.4 121 30.6
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 1.6e-12 77.4 121 30.6
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 2.1e-12 77.0 118 33.9
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 2.8e-12 76.6 118 32.2
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 2.8e-12 76.6 118 31.4
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 3.7e-12 76.3 118 31.4
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 3.7e-12 76.3 118 31.4
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 4.8e-12 75.9 121 31.4
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 4.8e-12 75.9 121 29.8
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 4.8e-12 75.9 121 30.6
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 6.2e-12 75.5 121 30.6
Actinidia04180 Actinidia chinensis HOM05D005144 ORTHO05D006112 8.1e-12 75.1 118 33.1
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 8.1e-12 75.1 118 32.2
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 1.1e-11 74.7 122 30.3
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.4e-11 74.3 120 32.5
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 1.4e-11 74.3 118 32.2
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 1.4e-11 74.3 118 32.2
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 1.8e-11 73.9 118 32.2
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 1.8e-11 73.9 120 27.5
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 1.8e-11 73.9 120 27.5
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 1.8e-11 73.9 118 31.4
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 2.4e-11 73.6 118 30.5
Duzib068G1441 Durio zibethinus HOM05D005144 ORTHO05D006112 9.0e-11 71.6 118 30.5
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 1.5e-10 70.9 118 28.0
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 1.5e-10 70.9 121 29.8
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 1.5e-10 70.9 156 28.8
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 1.5e-10 70.9 118 32.2
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 2.0e-10 70.5 118 29.7
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 5.8e-10 68.9 118 28.8
vmacro13890 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 5.8e-10 68.9 120 30.0
Hund14208 Selenicereus undatus HOM05D005144 ORTHO05D006112 7.6e-10 68.6 118 30.5
SGA_v2.0_scaffold96G29029 Striga asiatica HOM05D005144 ORTHO05D006112 6.4e-09 65.5 118 28.0
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 6.4e-09 65.5 117 30.8
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 7.1e-08 62.0 123 28.5
Carub.0007s1712 Capsella rubella HOM05D005144 ORTHO05D006112 9.3e-08 61.6 119 27.7
MCO04G552 Micromonas commoda HOM05D005668 ORTHO05D007082 2.1e-07 60.5 98 35.7
PRCOL_00006744 Prasinoderma coloniale HOM05D005668 ORTHO05D049035 2.1e-07 60.5 123 33.3
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 3.5e-07 59.7 96 40.6
AL7G29350 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 2.3e-06 57.0 117 27.4
C06p16940 Brassica napus HOM05D000589 ORTHO05D000401 2.3e-06 57.0 67 56.7
BolC6t36890H Brassica oleracea HOM05D000589 ORTHO05D000401 2.3e-06 57.0 67 56.7


User provided reference genes

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