Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 5.0e-130 468.0 277 100.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 4.7e-112 408.3 257 96.9
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.0e-106 390.6 257 83.7
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 6.6e-98 361.3 276 84.4
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 8.9e-95 350.9 261 83.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.4e-92 343.6 261 83.9
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 4.2e-92 342.0 261 82.8
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 5.4e-92 341.7 260 83.8
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.3e-90 337.0 261 83.5
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.3e-90 337.0 261 83.5
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.7e-90 336.7 261 83.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 8.7e-90 334.3 261 82.8
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.2e-86 323.9 261 81.6
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.3e-85 320.5 261 78.9
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 4.9e-85 318.5 255 79.2
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 3.0e-82 309.3 260 66.5
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 3.0e-82 309.3 276 67.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 2.4e-63 246.5 256 66.8
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.2e-60 236.1 239 62.3
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 2.7e-59 233.0 230 70.0
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.8e-58 230.3 245 53.5
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 8.7e-58 228.0 256 60.9
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 4.3e-57 225.7 243 64.2
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 8.2e-56 221.5 235 63.4
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.1e-55 221.1 245 63.7
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.1e-55 221.1 257 60.3
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.4e-55 219.9 245 63.3
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.2e-54 217.6 210 66.2
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.5e-54 217.2 221 57.9
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 2.0e-54 216.9 261 53.3
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 4.5e-54 215.7 205 67.8
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 3.8e-53 212.6 258 50.8
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.4e-52 210.7 246 50.0
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 1.4e-52 210.7 220 64.1
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.9e-52 210.3 232 51.3
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-51 207.6 254 59.1
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-51 207.6 254 59.1
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.2e-51 207.6 250 54.0
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.6e-51 207.2 234 62.0
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.7e-51 206.5 204 54.9
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 3.6e-51 206.1 245 53.9
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 6.1e-51 205.3 261 56.7
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 3.0e-50 203.0 268 53.4
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 5.1e-50 202.2 203 53.2
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 6.7e-50 201.8 259 52.1
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 6.7e-50 201.8 248 63.3
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.3e-48 197.6 248 58.9
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.3e-48 197.6 255 58.0
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.7e-48 197.2 220 61.4
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 2.2e-48 196.8 209 65.1
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-48 196.8 206 65.5
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 2.8e-48 196.4 260 58.8
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 4.8e-48 195.7 257 58.4
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.8e-48 195.7 195 55.9
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.8e-48 195.7 232 59.5
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 6.3e-48 195.3 235 61.7
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 8.2e-48 194.9 245 58.4
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 1.1e-47 194.5 251 59.4
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 1.8e-47 193.7 206 66.5
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 2.4e-47 193.4 256 48.8
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 5.3e-47 192.2 239 51.0
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 1.2e-46 191.0 255 56.5
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 4.5e-46 189.1 248 52.0
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 5.9e-46 188.7 259 45.9
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 1.0e-45 188.0 243 47.3
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.3e-45 187.6 260 56.5
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.7e-45 187.2 234 59.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.7e-45 187.2 233 49.8
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 2.9e-45 186.4 253 47.0
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 3.8e-45 186.0 239 45.6
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 6.5e-45 185.3 217 60.8
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.1e-44 184.5 257 44.4
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.4e-44 184.1 250 56.4
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.5e-44 183.3 263 44.1
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 3.2e-44 183.0 266 43.2
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.2e-44 183.0 249 53.8
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 9.4e-44 181.4 247 46.2
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 2.1e-43 180.3 218 58.7
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.7e-43 179.9 242 45.5
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.4e-42 177.6 271 52.8
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 3.0e-42 176.4 253 46.2
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 3.9e-42 176.0 251 45.4
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.1e-41 174.5 232 55.6
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 2.0e-41 173.7 228 57.5
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 3.3e-41 172.9 248 43.5
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 7.4e-41 171.8 241 56.0
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.7e-40 170.6 196 60.2
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.2e-40 170.2 252 54.0
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 3.7e-40 169.5 227 47.1
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 6.3e-40 168.7 258 51.9
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.3e-40 168.7 204 62.3
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 8.2e-40 168.3 140 62.1
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.4e-39 167.5 228 58.3
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.8e-39 167.2 259 52.5
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 5.3e-39 165.6 252 53.6
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.6e-38 164.1 245 42.0
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 2.0e-38 163.7 245 42.0
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 3.5e-38 162.9 251 41.4
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 1.0e-37 161.4 144 61.1
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.7e-37 160.6 252 52.4
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 3.8e-37 159.5 237 47.7
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 5.0e-37 159.1 256 51.6
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.1e-36 157.9 256 51.2
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.5e-36 157.5 157 56.1
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 3.2e-36 156.4 255 50.2
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 3.2e-36 156.4 256 51.2
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 4.2e-36 156.0 247 49.8
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 2.7e-35 153.3 248 40.7
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.3e-34 150.2 266 45.5
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.0e-33 147.1 265 49.1
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 2.6e-33 146.7 126 59.5
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.3e-33 146.4 129 60.5
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.4e-31 141.0 220 54.1
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 2.2e-29 133.7 245 49.0
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 5.0e-29 132.5 220 40.5
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 4.2e-28 129.4 254 47.2
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 5.5e-28 129.0 181 55.8
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.2e-27 127.9 135 53.3
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.7e-27 125.9 181 51.9
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.3e-24 117.9 132 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 5.9e-22 109.0 224 31.2
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.2e-19 101.3 228 33.8
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.8e-19 100.1 207 30.0
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 8.0e-19 98.6 203 31.0
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.2e-18 95.9 236 30.9
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 2.2e-16 90.5 97 51.5
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.4e-15 87.0 79 58.2
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.7e-14 83.6 181 29.8
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.0e-13 81.6 79 50.6
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 4.3e-12 76.3 238 27.7
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 4.7e-11 72.8 205 28.3
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 2.0e-09 67.4 213 27.7
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 3.4e-09 66.6 57 63.2
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 9.8e-09 65.1 84 46.4
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 5.4e-07 59.3 81 43.2
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 3.5e-06 56.6 87 39.1
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 7.8e-06 55.5 55 52.7


User provided reference genes

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