Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48036 Brassica carinata HOM05D000744 ORTHO05D000332 1.8e-182 642.5 332 100.0
BcaC09g47993 Brassica carinata HOM05D000744 ORTHO05D000332 2.5e-136 489.2 338 80.8
BolC1t05489H Brassica oleracea HOM05D000744 ORTHO05D000332 1.2e-125 453.8 348 75.6
BraA01t04330Z Brassica rapa HOM05D000744 ORTHO05D000332 2.2e-124 449.5 348 75.3
BcaC09g48035 Brassica carinata HOM05D000744 ORTHO05D000332 4.9e-124 448.4 348 74.7
BNapus_Darmor_BZH_scaffold_167p00160 Brassica napus HOM05D000744 ORTHO05D000332 4.9e-124 448.4 348 74.7
Sp3g07210 Schrenkiella parvula HOM05D000744 ORTHO05D000332 1.2e-114 417.2 331 71.3
AT3G08790 Arabidopsis thaliana HOM05D000744 ORTHO05D000332 1.5e-104 383.6 328 68.0
Carub.0003s0792 Capsella rubella HOM05D000744 ORTHO05D000332 1.9e-104 383.3 332 66.3
CARHR083110 Cardamine hirsuta HOM05D000744 ORTHO05D000332 8.2e-95 351.3 333 63.1
AL3G19790 Arabidopsis lyrata HOM05D000744 ORTHO05D000332 5.3e-94 348.6 331 62.8
Thhalv10022036m.g Eutrema salsugineum HOM05D000744 ORTHO05D000332 2.8e-87 326.2 331 61.3
BcaC09g47994 Brassica carinata HOM05D000744 ORTHO05D000332 1.4e-65 254.2 133 94.7
Aa31LG5G18790 Aethionema arabicum HOM05D000744 ORTHO05D000332 5.8e-48 195.7 357 44.3
THA.LOC104815057 Tarenaya hassleriana HOM05D000744 ORTHO05D000332 1.1e-41 174.9 343 43.4
Ciclev10007656m.g Citrus clementina HOM05D000744 ORTHO05D000332 2.6e-24 117.1 343 34.1
Manes.03G061600 Manihot esculenta HOM05D000744 ORTHO05D000332 2.2e-23 114.0 365 33.2
COL.COLO4_18683 Corchorus olitorius HOM05D000744 ORTHO05D000332 1.9e-22 110.9 365 33.2
MELO3C011154.2 Cucumis melo HOM05D000744 ORTHO05D000332 1.6e-21 107.8 366 33.9
Lj8A591T17 Lonicera japonica HOM05D000744 ORTHO05D000332 7.8e-21 105.5 357 33.6
Hma1.2p1_0422F.1_g150160 Hydrangea macrophylla HOM05D000744 ORTHO05D000332 1.7e-20 104.4 332 32.2
CSS0007423 Camellia sinensis var. sinensis HOM05D000744 ORTHO05D000332 3.9e-20 103.2 330 33.6
Sed0027395 Sechium edule HOM05D000744 ORTHO05D000332 5.1e-20 102.8 382 33.2
Cpa.g.sc78.69 Carica papaya HOM05D000744 ORTHO05D000332 6.6e-20 102.4 364 33.2
Glyma.04G081100 Glycine max HOM05D000744 ORTHO05D000332 1.1e-19 101.7 368 32.6
Sabra18G0039200 Salix brachista HOM05D000744 ORTHO05D000332 1.9e-19 100.9 345 31.9
Glyma.06G082800 Glycine max HOM05D000744 ORTHO05D000332 2.5e-19 100.5 381 31.2
TWI32G0640 Tripterygium wilfordii HOM05D000744 ORTHO05D000332 2.5e-19 100.5 353 32.6
CsaV3_2G031010 Cucumis sativus L. HOM05D000744 ORTHO05D000332 4.3e-19 99.8 377 32.6
Duzib187G1276 Durio zibethinus HOM05D000744 ORTHO05D000332 4.3e-19 99.8 354 31.9
Actinidia31230 Actinidia chinensis HOM05D000744 ORTHO05D000332 5.6e-19 99.4 341 30.8
Ca_15612_v3 Cicer arietinum L. HOM05D000744 ORTHO05D000332 5.6e-19 99.4 349 31.5
Rhsim02G0181000 Rhododendron simsii HOM05D000744 ORTHO05D000332 5.6e-19 99.4 338 31.7
Thecc.09G041300 Theobroma cacao HOM05D000744 ORTHO05D000332 7.3e-19 99.0 355 32.4
Psat5g022600 Pisum sativum HOM05D000744 ORTHO05D000332 9.6e-19 98.6 344 32.0
Duzib150G0276 Durio zibethinus HOM05D000744 ORTHO05D000332 1.6e-18 97.8 359 32.6
Medtr1g026840 Medicago truncatula HOM05D000744 ORTHO05D000332 1.6e-18 97.8 360 31.9
GSVIVG01035657001 Vitis vinifera HOM05D000744 ORTHO05D000332 1.6e-18 97.8 373 31.4
Duzib168G2268 Durio zibethinus HOM05D000744 ORTHO05D000332 3.6e-18 96.7 342 32.2
QL12p029556 Quercus lobata HOM05D000744 ORTHO05D000332 6.2e-18 95.9 360 31.4
Actinidia15733 Actinidia chinensis HOM05D000744 ORTHO05D000332 8.1e-18 95.5 341 32.3
Dinv30264 Davidia involucrata HOM05D000744 ORTHO05D000332 1.1e-17 95.1 343 33.8
Potri.018G039100 Populus trichocarpa HOM05D000744 ORTHO05D000332 1.1e-17 95.1 338 32.0
TAR383G0445 Trochodendron aralioides HOM05D000744 ORTHO05D000332 1.1e-17 95.1 355 32.7
Dinv14239 Davidia involucrata HOM05D000744 ORTHO05D000332 2.4e-17 94.0 344 33.1
Manes.16G071200 Manihot esculenta HOM05D000744 ORTHO05D000332 4.0e-17 93.2 353 34.8
TWI34G1595 Tripterygium wilfordii HOM05D000744 ORTHO05D000332 4.0e-17 93.2 367 32.2
Aqoxy7G01592 Aquilegia oxysepala HOM05D000744 ORTHO05D000332 6.9e-17 92.4 358 31.6
arahy.Tifrunner.gnm1.ann1.W3VFTF Arachis hypogaea HOM05D000744 ORTHO05D000332 1.2e-16 91.7 360 30.8
Oeu008292.1 Olea europaea HOM05D000744 ORTHO05D000332 1.5e-16 91.3 328 32.9
Oeu008293.1 Olea europaea HOM05D000744 ORTHO05D000332 1.5e-16 91.3 328 32.9
Glyma.14G142900 Glycine max HOM05D000744 ORTHO05D000332 2.0e-16 90.9 357 30.0
PSO782G4033 Papaver somniferum HOM05D000744 ORTHO05D000332 2.0e-16 90.9 204 39.7
arahy.Tifrunner.gnm1.ann1.46S9P8 Arachis hypogaea HOM05D000744 ORTHO05D000332 3.4e-16 90.1 361 30.7
Lj1g0001142 Lotus japonicus HOM05D000744 ORTHO05D000332 3.4e-16 90.1 343 30.9
Lalb_Chr23g0269521 Lupinus albus HOM05D000744 ORTHO05D000332 3.4e-16 90.1 357 31.1
MD15G1096400 Malus domestica HOM05D000744 ORTHO05D000332 3.4e-16 90.1 389 29.8
Potri.006G241000 Populus trichocarpa HOM05D000744 ORTHO05D000332 3.4e-16 90.1 339 31.6
ClCG08G012340 Citrullus lanatus HOM05D000744 ORTHO05D000332 5.8e-16 89.4 397 31.5
RcHm_v2.0_Chr6g0305901 Rosa chinensis HOM05D000744 ORTHO05D000332 7.6e-16 89.0 197 38.6
AUR62009313 Chenopodium quinoa HOM05D000744 ORTHO05D000332 9.9e-16 88.6 351 29.6
PGR031G2136 Punica granatum HOM05D000744 ORTHO05D000332 1.3e-15 88.2 334 29.0
Ca_12733_v3 Cicer arietinum L. HOM05D000744 ORTHO05D000332 1.7e-15 87.8 357 30.8
Ca_12739_v3 Cicer arietinum L. HOM05D000744 ORTHO05D000332 1.7e-15 87.8 357 30.8
Haze_21869 Corylus avellana HOM05D000744 ORTHO05D000332 2.2e-15 87.4 366 30.3
Prupe.1G451300 Prunus persica HOM05D000744 ORTHO05D000332 2.2e-15 87.4 203 39.4
Carub.0007s0773 Capsella rubella HOM05D000744 ORTHO05D000332 2.9e-15 87.0 368 34.0
SGA_v2.0_scaffold243G44292 Striga asiatica HOM05D000744 ORTHO05D000332 4.9e-15 86.3 330 31.5
BolC3t21000H Brassica oleracea HOM05D000744 ORTHO05D000332 6.4e-15 85.9 338 33.7
Lalb_Chr08g0243211 Lupinus albus HOM05D000744 ORTHO05D000332 6.4e-15 85.9 359 29.5
MD08G1116900 Malus domestica HOM05D000744 ORTHO05D000332 6.4e-15 85.9 192 37.0
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 6.4e-15 85.9 375 27.5
CARHR240750 Cardamine hirsuta HOM05D000744 ORTHO05D000332 8.4e-15 85.5 349 35.5
Lj8C599T3 Lonicera japonica HOM05D000744 ORTHO05D000332 8.4e-15 85.5 201 40.3
TWI63G0783 Tripterygium wilfordii HOM05D000744 ORTHO05D000332 8.4e-15 85.5 359 30.6
Gohir.D07G026900 Gossypium hirsutum HOM05D000744 ORTHO05D000332 1.4e-14 84.7 367 29.7
Gorai.001G027900 Gossypium raimondii HOM05D000744 ORTHO05D000332 1.4e-14 84.7 367 29.4
ECA248G2544 Erigeron canadensis HOM05D000744 ORTHO05D000332 2.4e-14 84.0 341 29.0
FAN20G2935 Fragaria x ananassa HOM05D000744 ORTHO05D000332 3.2e-14 83.6 204 40.2
Phvul.009G107100 Phaseolus vulgaris HOM05D000744 ORTHO05D000332 3.2e-14 83.6 192 38.0
SalBow1G0030 Salvia bowleyana HOM05D000744 ORTHO05D000332 3.2e-14 83.6 318 29.2
vmacro11073 Vaccinium macrocarpon HOM05D000744 ORTHO05D000332 3.2e-14 83.6 188 37.2
Gohir.A07G023300 Gossypium hirsutum HOM05D000744 ORTHO05D000332 4.2e-14 83.2 367 29.7
Aa31LG2G17200 Aethionema arabicum HOM05D000744 ORTHO05D000332 5.4e-14 82.8 336 32.1
Ah.16g105350 Amaranthus hybridus HOM05D000744 ORTHO05D000332 5.4e-14 82.8 194 34.5
Medtr3g110108 Medicago truncatula HOM05D000744 ORTHO05D000332 5.4e-14 82.8 325 30.8
AUR62029666 Chenopodium quinoa HOM05D000744 ORTHO05D000332 7.1e-14 82.4 359 28.1
Sed0008487 Sechium edule HOM05D000744 ORTHO05D000332 7.1e-14 82.4 386 29.5
TAR636G3538 Trochodendron aralioides HOM05D000744 ORTHO05D000332 9.3e-14 82.0 353 34.0
VMungo1309G2017 Vigna mungo HOM05D000744 ORTHO05D000332 1.2e-13 81.6 200 39.0
FAN15G3057 Fragaria x ananassa HOM05D000744 ORTHO05D000332 1.6e-13 81.3 192 41.1
VMungo0647G2303 Vigna mungo HOM05D000744 ORTHO05D000332 1.6e-13 81.3 344 30.5
MSTRG.14020 Avicennia marina HOM05D000744 ORTHO05D000332 2.1e-13 80.9 213 36.2
Ah.10g035120 Amaranthus hybridus HOM05D000744 ORTHO05D000332 3.5e-13 80.1 355 30.1
AL7G18990 Arabidopsis lyrata HOM05D000744 ORTHO05D000332 3.5e-13 80.1 360 33.1
BcaC09g52070 Brassica carinata HOM05D000744 ORTHO05D000332 4.6e-13 79.7 350 30.3
CAN.G21.35 Capsicum annuum HOM05D000744 ORTHO05D000332 4.6e-13 79.7 363 28.9
CiPaw.08G024300 Carya illinoinensis HOM05D000744 ORTHO05D000332 6.0e-13 79.3 352 30.1
CSS0031519 Camellia sinensis var. sinensis HOM05D000744 ORTHO05D000332 7.9e-13 79.0 328 30.8
CiPaw.07G206100 Carya illinoinensis HOM05D000744 ORTHO05D000332 7.9e-13 79.0 343 30.6
PSO566G0251 Papaver somniferum HOM05D000744 ORTHO05D000332 7.9e-13 79.0 191 39.3
Peaxi162Scf00276g00311 Petunia axillaris HOM05D000744 ORTHO05D000332 7.9e-13 79.0 355 29.6
Eucgr.C01589 Eucalyptus grandis HOM05D000744 ORTHO05D000332 1.0e-12 78.6 340 29.7
Actinidia14664 Actinidia chinensis HOM05D000744 ORTHO05D007222 1.3e-12 78.2 184 32.6
Psat0s1315g0040 Pisum sativum HOM05D000744 ORTHO05D000332 1.3e-12 78.2 390 29.0
SGA_v2.0_scaffold185G40044 Striga asiatica HOM05D000744 ORTHO05D000332 1.3e-12 78.2 159 41.5
AT4G32760 Arabidopsis thaliana HOM05D000744 ORTHO05D000332 1.8e-12 77.8 363 32.8
Sc09g0009210 Simmondsia chinensis HOM05D000744 ORTHO05D000332 2.3e-12 77.4 361 31.6
Lalb_Chr11g0064421 Lupinus albus HOM05D000744 ORTHO05D000332 3.0e-12 77.0 340 28.5
Solyc08g068370.3 Solanum lycopersicum HOM05D000744 ORTHO05D000332 3.0e-12 77.0 371 29.1
Thhalv10024602m.g Eutrema salsugineum HOM05D000744 ORTHO05D000332 3.9e-12 76.6 346 31.5
unitig_747.g21867 Utricularia gibba HOM05D000744 ORTHO05D000332 3.9e-12 76.6 210 34.8
Sp7g30520 Schrenkiella parvula HOM05D000744 ORTHO05D000332 5.1e-12 76.3 367 31.9
AUR62041726 Chenopodium quinoa HOM05D000744 ORTHO05D000332 6.7e-12 75.9 360 30.0
Nn3g18084 Nelumbo nucifera HOM05D000744 ORTHO05D000332 6.7e-12 75.9 366 31.7
EL10Ac2g04055 Beta vulgaris HOM05D000744 ORTHO05D000332 8.7e-12 75.5 224 31.7
Sabra06G0188400 Salix brachista HOM05D000744 ORTHO05D000332 8.7e-12 75.5 363 28.9
A03p61570 Brassica napus HOM05D000744 ORTHO05D000332 1.5e-11 74.7 346 29.5
BraA03t15199Z Brassica rapa HOM05D000744 ORTHO05D000332 1.5e-11 74.7 346 29.5
Eucgr.E03507 Eucalyptus grandis HOM05D000744 ORTHO05D000332 1.5e-11 74.7 188 37.2
Cc08_g09130 Coffea canephora HOM05D000744 ORTHO05D000332 1.9e-11 74.3 359 29.8
Lj7C705T16 Lonicera japonica HOM05D000744 ORTHO05D000332 1.9e-11 74.3 200 37.0
arahy.Tifrunner.gnm1.ann1.QP6ZFN Arachis hypogaea HOM05D000744 ORTHO05D000332 2.5e-11 73.9 368 29.9
BcaNung04525 Brassica carinata HOM05D000744 ORTHO05D000332 2.5e-11 73.9 347 31.1
Sopen08g022210 Solanum pennellii HOM05D000744 ORTHO05D000332 2.5e-11 73.9 358 29.3
Sopen11g028950 Solanum pennellii HOM05D000744 ORTHO05D000332 2.5e-11 73.9 166 36.7
Phvul.001G063400 Phaseolus vulgaris HOM05D000744 ORTHO05D000332 3.3e-11 73.6 341 28.7
Nn2g11684 Nelumbo nucifera HOM05D000744 ORTHO05D000332 4.3e-11 73.2 412 27.9
C01p06140 Brassica napus HOM05D000744 ORTHO05D000332 7.4e-11 72.4 349 33.2
BolC1t00612H Brassica oleracea HOM05D000744 ORTHO05D000332 7.4e-11 72.4 349 33.2
BraA08t33744Z Brassica rapa HOM05D000744 ORTHO05D000332 9.6e-11 72.0 205 38.5
CsaV3_3G048660 Cucumis sativus L. HOM05D000744 ORTHO05D000332 9.6e-11 72.0 336 29.2
Lsat_1_v5_gn_1_49720 Lactuca sativa HOM05D000744 ORTHO05D000332 9.6e-11 72.0 143 39.2
C03p87040 Brassica napus HOM05D000744 ORTHO05D000332 1.3e-10 71.6 351 32.5
arahy.Tifrunner.gnm1.ann1.9KTC61 Arachis hypogaea HOM05D000744 ORTHO05D000332 1.6e-10 71.2 360 29.2
Atru.chr7.2146 Acer truncatum HOM05D000744 ORTHO05D000332 2.1e-10 70.9 141 39.0
Lsat_1_v5_gn_5_33420 Lactuca sativa HOM05D000744 ORTHO05D000332 2.1e-10 70.9 158 36.1
Nitab4.5_0000664g0270 Nicotiana tabacum HOM05D000744 ORTHO05D000332 2.1e-10 70.9 358 28.8
CANSAT25G0045 Cannabis sativa HOM05D000744 ORTHO05D000332 2.8e-10 70.5 356 29.8
BcaNung03602 Brassica carinata HOM05D000744 ORTHO05D000332 3.7e-10 70.1 341 30.2
C07p59330 Brassica napus HOM05D000744 ORTHO05D000332 3.7e-10 70.1 341 30.2
BolC7t46378H Brassica oleracea HOM05D000744 ORTHO05D000332 3.7e-10 70.1 335 29.6
MELO3C003455.2 Cucumis melo HOM05D000744 ORTHO05D000332 3.7e-10 70.1 328 29.0
A08p17920 Brassica napus HOM05D000744 ORTHO05D000332 4.8e-10 69.7 187 37.4
ClCG11G015240 Citrullus lanatus HOM05D000744 ORTHO05D000332 4.8e-10 69.7 336 28.9
ECA246G1785 Erigeron canadensis HOM05D000744 ORTHO05D000332 1.4e-09 68.2 346 26.6
Gohir.D08G272100 Gossypium hirsutum HOM05D000744 ORTHO05D000332 1.4e-09 68.2 364 26.4
A01p05560 Brassica napus HOM05D000744 ORTHO05D000332 1.8e-09 67.8 328 32.0
BraA01t00527Z Brassica rapa HOM05D000744 ORTHO05D000332 1.8e-09 67.8 328 32.0
Migut.A00227 Erythranthe guttata HOM05D000744 ORTHO05D000332 2.4e-09 67.4 179 35.8
SalBow4G1676 Salvia bowleyana HOM05D000744 ORTHO05D000332 3.1e-09 67.0 195 33.3
unitig_0.g2804 Utricularia gibba HOM05D000744 ORTHO05D000332 3.1e-09 67.0 332 29.2
Glyma.17G191000 Glycine max HOM05D000744 ORTHO05D000332 4.0e-09 66.6 152 37.5
Gorai.004G290500 Gossypium raimondii HOM05D000744 ORTHO05D000332 4.0e-09 66.6 204 30.9
Hund03411 Selenicereus undatus HOM05D000744 ORTHO05D000332 5.3e-09 66.2 352 27.0
Nitab4.5_0001567g0090 Nicotiana tabacum HOM05D000744 ORTHO05D000332 6.9e-09 65.9 366 28.4
Gohir.D06G094300 Gossypium hirsutum HOM05D000744 ORTHO05D000332 1.2e-08 65.1 398 25.4
Aqoxy7G03830 Aquilegia oxysepala HOM05D000744 ORTHO05D000332 1.5e-08 64.7 221 29.9
MBI01_g30750_MAGBIO Magnolia biondii HOM05D000744 ORTHO05D000332 1.5e-08 64.7 189 34.9
Nitab4.5_0005839g0010 Nicotiana tabacum HOM05D000744 ORTHO05D000332 2.0e-08 64.3 109 42.2
Hund19533 Selenicereus undatus HOM05D000744 ORTHO05D000332 2.0e-08 64.3 220 31.4
Gohir.A05G047700 Gossypium hirsutum HOM05D000744 ORTHO05D000332 2.6e-08 63.9 68 54.4
AUR62043616 Chenopodium quinoa HOM05D000744 ORTHO05D000332 4.5e-08 63.2 367 27.0
Gorai.009G051300 Gossypium raimondii HOM05D000744 ORTHO05D000332 5.8e-08 62.8 97 45.4
TAR626G0846 Trochodendron aralioides HOM05D000744 ORTHO05D000332 5.8e-08 62.8 344 30.5
Solyc11g071270.2 Solanum lycopersicum HOM05D000744 ORTHO05D000332 7.6e-08 62.4 171 33.9
Gorai.010G108800 Gossypium raimondii HOM05D000744 ORTHO05D000332 1.3e-07 61.6 379 26.1
Peaxi162Scf01578g00018 Petunia axillaris HOM05D000744 ORTHO05D000332 1.3e-07 61.6 175 34.3
Gohir.D05G050000 Gossypium hirsutum HOM05D000744 ORTHO05D000332 1.7e-07 61.2 97 44.3
Nitab4.5_0000052g0230 Nicotiana tabacum HOM05D000744 ORTHO05D000332 1.7e-07 61.2 109 42.2
FvH4_2g35970 Fragaria vesca HOM05D000744 ORTHO05D000332 2.2e-07 60.8 133 40.6
FAN27G2360 Fragaria x ananassa HOM05D000744 ORTHO05D000332 2.9e-07 60.5 136 41.2
Gohir.A08G250533 Gossypium hirsutum HOM05D000744 ORTHO05D000332 2.9e-07 60.5 357 25.8
Sopen10g013420 Solanum pennellii HOM05D000744 ORTHO05D000332 2.9e-07 60.5 162 35.8
SGA_v2.0_scaffold163G38082 Striga asiatica HOM05D000744 ORTHO05D000332 6.4e-07 59.3 182 34.1
Gohir.A08G250600 Gossypium hirsutum HOM05D000744 ORTHO05D000332 1.1e-06 58.5 324 26.5
Os02g0273700 Oryza sativa ssp. japonica HOM05D000744 ORTHO05D000332 1.4e-06 58.2 192 33.9
DCAR_003115 Daucus carota HOM05D000744 ORTHO05D000332 2.5e-06 57.4 358 28.8
HPP92_000519 Vanilla planifolia HOM05D000744 ORTHO05D000332 4.2e-06 56.6 351 26.5


User provided reference genes

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