Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48033 Brassica carinata HOM05D000046 ORTHO05D004582 1.8e-131 472.6 245 100.0
Sp3g07180 Schrenkiella parvula HOM05D000046 ORTHO05D004582 7.4e-93 344.4 234 82.9
BNapus_Darmor_BZH_scaffold_167p00150 Brassica napus HOM05D000046 ORTHO05D004582 2.4e-91 339.3 229 84.3
Thhalv10020426m.g Eutrema salsugineum HOM05D000046 ORTHO05D004582 2.6e-90 335.9 233 82.4
BraA01t04331Z Brassica rapa HOM05D000046 ORTHO05D004582 5.9e-90 334.7 228 84.6
BolC1t05490H Brassica oleracea HOM05D000046 ORTHO05D004582 2.2e-89 332.8 229 83.4
AT3G08760 Arabidopsis thaliana HOM05D000046 ORTHO05D004582 5.0e-89 331.6 235 80.0
BcaC05g29612 Brassica carinata HOM05D000046 ORTHO05D004582 1.1e-88 330.5 237 82.3
C05p59110 Brassica napus HOM05D000046 ORTHO05D004582 1.4e-88 330.1 238 81.9
AL3G19750 Arabidopsis lyrata HOM05D000046 ORTHO05D004582 2.5e-88 329.3 235 79.6
CARHR083050 Cardamine hirsuta HOM05D000046 ORTHO05D004582 1.2e-87 327.0 235 77.9
Carub.0003s0789 Capsella rubella HOM05D000046 ORTHO05D004582 3.3e-85 318.9 234 76.9
A05p40050 Brassica napus HOM05D000046 ORTHO05D004582 9.7e-85 317.4 236 80.5
BolC5t34585H Brassica oleracea HOM05D000046 ORTHO05D004582 6.3e-84 314.7 237 79.7
Aa31LG5G18770 Aethionema arabicum HOM05D000046 ORTHO05D004582 6.3e-76 288.1 240 70.8
THA.LOC104823318 Tarenaya hassleriana HOM05D000046 ORTHO05D004582 2.9e-57 226.1 267 55.1
BcaC09g48034 Brassica carinata HOM05D000046 ORTHO05D004582 6.5e-57 224.9 216 66.7
Potri.006G108200 Populus trichocarpa HOM05D000046 ORTHO05D004582 1.7e-44 183.7 239 51.5
Thecc.04G152000 Theobroma cacao HOM05D000046 ORTHO05D004582 1.7e-44 183.7 239 53.6
Duzib268G0736 Durio zibethinus HOM05D000046 ORTHO05D004582 2.2e-44 183.3 239 51.9
Lj3A941T102 Lonicera japonica HOM05D000046 ORTHO05D004582 2.4e-43 179.9 245 51.4
Peaxi162Scf00732g00327 Petunia axillaris HOM05D000046 ORTHO05D004582 9.2e-43 177.9 247 49.8
Dinv16981 Davidia involucrata HOM05D000046 ORTHO05D004582 1.6e-42 177.2 240 49.6
Manes.09G117600 Manihot esculenta HOM05D000046 ORTHO05D004582 1.6e-42 177.2 247 52.6
RcHm_v2.0_Chr3g0460511 Rosa chinensis HOM05D000046 ORTHO05D004582 1.6e-42 177.2 242 49.2
Aqoxy4G02409 Aquilegia oxysepala HOM05D000046 ORTHO05D004582 3.5e-42 176.0 242 48.3
Actinidia20789 Actinidia chinensis HOM05D000046 ORTHO05D004582 4.6e-42 175.6 243 50.6
arahy.Tifrunner.gnm1.ann1.XMHI28 Arachis hypogaea HOM05D000046 ORTHO05D004582 1.7e-41 173.7 238 50.4
arahy.Tifrunner.gnm1.ann1.1K28CT Arachis hypogaea HOM05D000046 ORTHO05D004582 5.0e-41 172.2 238 50.0
Solyc10g075040.3 Solanum lycopersicum HOM05D000046 ORTHO05D004582 6.6e-41 171.8 241 49.4
Sopen10g027520 Solanum pennellii HOM05D000046 ORTHO05D004582 8.6e-41 171.4 241 49.0
Duzib212G0090 Durio zibethinus HOM05D000046 ORTHO05D004582 1.1e-40 171.0 239 48.1
TWI53G0057 Tripterygium wilfordii HOM05D000046 ORTHO05D004582 1.1e-40 171.0 242 50.8
Peaxi162Scf01238g00222 Petunia axillaris HOM05D000046 ORTHO05D004582 1.5e-40 170.6 250 48.0
Hma1.2p1_0174F.1_g076850 Hydrangea macrophylla HOM05D000046 ORTHO05D004582 1.9e-40 170.2 240 50.0
FAN05G5114 Fragaria x ananassa HOM05D000046 ORTHO05D004582 2.5e-40 169.9 243 48.6
PGSC0003DMG400031235 Solanum tuberosum HOM05D000046 ORTHO05D004582 2.5e-40 169.9 241 49.0
FAN02G2579 Fragaria x ananassa HOM05D000046 ORTHO05D004582 4.3e-40 169.1 243 48.6
Sabra06G0084400 Salix brachista HOM05D000046 ORTHO05D004582 7.3e-40 168.3 242 49.6
Gorai.011G127600 Gossypium raimondii HOM05D000046 ORTHO05D004582 1.2e-39 167.5 239 49.8
TWI74G1141 Tripterygium wilfordii HOM05D000046 ORTHO05D004582 1.2e-39 167.5 239 49.8
BcaC09g47992 Brassica carinata HOM05D000046 ORTHO05D004582 2.1e-39 166.8 128 76.6
CAN.G63.7 Capsicum annuum HOM05D000046 ORTHO05D004582 2.1e-39 166.8 241 48.1
Cc06_g00420 Coffea canephora HOM05D000046 ORTHO05D004582 2.1e-39 166.8 245 48.2
Gohir.D10G115800 Gossypium hirsutum HOM05D000046 ORTHO05D004582 3.6e-39 166.0 239 49.4
Gorai.006G235200 Gossypium raimondii HOM05D000046 ORTHO05D004582 3.6e-39 166.0 234 47.4
Lalb_Chr03g0043761 Lupinus albus HOM05D000046 ORTHO05D004582 4.7e-39 165.6 238 46.6
CSS0025202 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D004582 6.2e-39 165.2 245 51.0
Gohir.D09G214800 Gossypium hirsutum HOM05D000046 ORTHO05D004582 6.2e-39 165.2 236 47.0
TPR.G8205 Trifolium pratense HOM05D000046 ORTHO05D004582 6.2e-39 165.2 244 47.1
PSO384G3769 Papaver somniferum HOM05D000046 ORTHO05D004582 1.1e-38 164.5 253 48.2
COL.COLO4_16365 Corchorus olitorius HOM05D000046 ORTHO05D004582 1.8e-38 163.7 244 50.8
MD12G1188000 Malus domestica HOM05D000046 ORTHO05D004582 1.8e-38 163.7 247 45.3
QL07p032160 Quercus lobata HOM05D000046 ORTHO05D004582 1.8e-38 163.7 239 50.2
Medtr7g073230 Medicago truncatula HOM05D000046 ORTHO05D004582 2.3e-38 163.3 239 48.5
Nitab4.5_0009347g0010 Nicotiana tabacum HOM05D000046 ORTHO05D004582 2.3e-38 163.3 242 48.3
CiPaw.10G164700 Carya illinoinensis HOM05D000046 ORTHO05D004582 3.1e-38 162.9 239 49.8
Haze_21172 Corylus avellana HOM05D000046 ORTHO05D004582 3.1e-38 162.9 239 51.0
Gohir.A09G213656 Gossypium hirsutum HOM05D000046 ORTHO05D004582 3.1e-38 162.9 235 46.8
TAR633G1774 Trochodendron aralioides HOM05D000440 ORTHO05D004582 3.1e-38 162.9 239 48.1
Actinidia32565 Actinidia chinensis HOM05D000046 ORTHO05D004582 4.0e-38 162.5 241 49.4
FAN05G5072 Fragaria x ananassa HOM05D000046 ORTHO05D004582 5.2e-38 162.2 243 47.3
Phvul.008G083000 Phaseolus vulgaris HOM05D000046 ORTHO05D004582 5.2e-38 162.2 239 49.4
PSO339G1115 Papaver somniferum HOM05D000046 ORTHO05D004582 6.8e-38 161.8 253 47.8
MD04G1174400 Malus domestica HOM05D000046 ORTHO05D004582 1.5e-37 160.6 247 44.1
Glyma.09G275100 Glycine max HOM05D000046 ORTHO05D004582 2.0e-37 160.2 239 47.7
Prupe.6G293300 Prunus persica HOM05D000046 ORTHO05D004582 3.4e-37 159.5 254 44.1
Lalb_Chr01g0023741 Lupinus albus HOM05D000046 ORTHO05D004582 4.4e-37 159.1 237 48.9
Actinidia11509 Actinidia chinensis HOM05D000046 ORTHO05D004582 7.5e-37 158.3 243 47.7
vmacro08936 Vaccinium macrocarpon HOM05D000046 ORTHO05D004582 7.5e-37 158.3 241 46.5
Atru.chr8.2402 Acer truncatum HOM05D000046 ORTHO05D004582 9.8e-37 157.9 241 46.5
Sabra04G0153200 Salix brachista HOM05D000046 ORTHO05D004582 9.8e-37 157.9 243 48.6
Ca_07760_v3 Cicer arietinum L. HOM05D000046 ORTHO05D004582 2.9e-36 156.4 242 47.9
Duzib151G0935 Durio zibethinus HOM05D000046 ORTHO05D004582 3.7e-36 156.0 235 48.5
Eucgr.A00740 Eucalyptus grandis HOM05D000046 ORTHO05D004582 3.7e-36 156.0 243 44.4
Medtr4g018790 Medicago truncatula HOM05D000046 ORTHO05D004582 3.7e-36 156.0 250 46.4
AUR62029732 Chenopodium quinoa HOM05D000046 ORTHO05D004582 4.9e-36 155.6 238 47.5
Nitab4.5_0005329g0030 Nicotiana tabacum HOM05D000046 ORTHO05D004582 6.4e-36 155.2 242 47.5
PGSC0003DMG400031465 Solanum tuberosum HOM05D000046 ORTHO05D004582 6.4e-36 155.2 248 46.0
VMungo1383G0578 Vigna mungo HOM05D000046 ORTHO05D004582 8.3e-36 154.8 236 47.5
Gohir.A10G150500 Gossypium hirsutum HOM05D000046 ORTHO05D004582 1.1e-35 154.5 236 46.6
Sc20g0006930 Simmondsia chinensis HOM05D000046 ORTHO05D004582 1.1e-35 154.5 241 46.9
Sopen09g015400 Solanum pennellii HOM05D000046 ORTHO05D004582 1.4e-35 154.1 248 45.6
AUR62006391 Chenopodium quinoa HOM05D000046 ORTHO05D004582 1.9e-35 153.7 238 47.1
Glyma.18G214000 Glycine max HOM05D000046 ORTHO05D004582 2.4e-35 153.3 238 47.1
Hund19766 Selenicereus undatus HOM05D000046 ORTHO05D004582 2.4e-35 153.3 239 48.1
GSVIVG01030183001 Vitis vinifera HOM05D000046 ORTHO05D004582 2.4e-35 153.3 236 46.6
CAN.G99.8 Capsicum annuum HOM05D000046 ORTHO05D004582 5.4e-35 152.1 247 44.9
FAN09G3973 Fragaria x ananassa HOM05D000046 ORTHO05D004582 5.4e-35 152.1 240 45.0
Ah.08g209430 Amaranthus hybridus HOM05D000046 ORTHO05D004582 1.6e-34 150.6 238 46.2
TAR623G0297 Trochodendron aralioides HOM05D000046 ORTHO05D004582 1.6e-34 150.6 239 46.4
ATR1127G065 Amborella trichopoda HOM05D000046 ORTHO05D004582 2.0e-34 150.2 233 47.6
Lj1g0002071 Lotus japonicus HOM05D000046 ORTHO05D004582 2.7e-34 149.8 241 46.1
Solyc09g042260.3 Solanum lycopersicum HOM05D000046 ORTHO05D004582 2.7e-34 149.8 248 45.6
MSTRG.18945 Avicennia marina HOM05D000046 ORTHO05D004582 3.5e-34 149.4 247 44.5
CiPaw.09G221100 Carya illinoinensis HOM05D000046 ORTHO05D004582 3.5e-34 149.4 239 49.4
Gohir.D02G003900 Gossypium hirsutum HOM05D000046 ORTHO05D004582 3.5e-34 149.4 240 45.8
PGR031G2179 Punica granatum HOM05D000046 ORTHO05D004582 3.5e-34 149.4 240 47.1
Gorai.005G004400 Gossypium raimondii HOM05D000046 ORTHO05D004582 4.6e-34 149.1 240 46.2
Sed0021990 Sechium edule HOM05D000046 ORTHO05D004582 6.0e-34 148.7 243 45.7
ClCG10G022710 Citrullus lanatus HOM05D000046 ORTHO05D004582 1.0e-33 147.9 235 44.3
Ciclev10011405m.g Citrus clementina HOM05D000046 ORTHO05D004582 1.3e-33 147.5 244 45.5
Lalb_Chr19g0124001 Lupinus albus HOM05D000046 ORTHO05D004582 1.3e-33 147.5 242 47.5
Ah.15g090070 Amaranthus hybridus HOM05D000046 ORTHO05D004582 1.7e-33 147.1 232 47.0
CsaV3_3G033120 Cucumis sativus L. HOM05D000046 ORTHO05D004582 1.7e-33 147.1 240 45.4
Gohir.A02G003500 Gossypium hirsutum HOM05D000046 ORTHO05D004582 3.0e-33 146.4 241 46.5
CSS0045212 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D004582 3.9e-33 146.0 240 45.4
MBI03_g40027_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D004582 3.9e-33 146.0 243 44.9
Lj2A59T43 Lonicera japonica HOM05D000046 ORTHO05D004582 5.0e-33 145.6 244 45.9
Nn2g10309 Nelumbo nucifera HOM05D000046 ORTHO05D004582 6.6e-33 145.2 242 44.6
Psat7g242800 Pisum sativum HOM05D000046 ORTHO05D004582 8.6e-33 144.8 239 46.0
MELO3C009105.2 Cucumis melo HOM05D000046 ORTHO05D004582 2.5e-32 143.3 286 40.9
Rhsim04G0122000 Rhododendron simsii HOM05D000046 ORTHO05D004582 2.5e-32 143.3 243 45.7
CsaV3_4G027180 Cucumis sativus L. HOM05D000046 ORTHO05D004582 4.3e-32 142.5 241 45.6
HPP92_018089 Vanilla planifolia HOM05D000046 ORTHO05D004582 5.6e-32 142.1 240 43.3
Potri.016G136400 Populus trichocarpa HOM05D000046 ORTHO05D004582 7.3e-32 141.7 258 45.3
MSTRG.5502 Avicennia marina HOM05D000046 ORTHO05D004582 9.5e-32 141.4 244 45.5
CSS0050016 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D004582 9.5e-32 141.4 240 44.6
ClCG04G006360 Citrullus lanatus HOM05D000046 ORTHO05D004582 1.6e-31 140.6 238 46.6
CANSAT35G0690 Cannabis sativa HOM05D000046 ORTHO05D004582 2.8e-31 139.8 242 44.6
HPP92_015435 Vanilla planifolia HOM05D000046 ORTHO05D004582 2.8e-31 139.8 241 43.6
Rhsim05G0230500 Rhododendron simsii HOM05D000046 ORTHO05D004582 3.6e-31 139.4 241 44.8
Psat3g119000 Pisum sativum HOM05D000046 ORTHO05D004582 4.7e-31 139.0 242 43.8
Migut.J00041 Erythranthe guttata HOM05D000046 ORTHO05D004582 6.2e-31 138.7 247 43.7
SGA_v2.0_scaffold85G26624 Striga asiatica HOM05D000046 ORTHO05D004582 8.1e-31 138.3 252 44.8
Nn5g26852 Nelumbo nucifera HOM05D000046 ORTHO05D004582 1.4e-30 137.5 238 43.7
SGA_v2.0_scaffold373G50182 Striga asiatica HOM05D000046 ORTHO05D004582 1.4e-30 137.5 251 42.2
FvH4_6g09920 Fragaria vesca HOM05D000046 ORTHO05D004582 3.1e-30 136.3 238 42.4
FAN14G0690 Fragaria x ananassa HOM05D000046 ORTHO05D004582 3.1e-30 136.3 238 42.4
vmacro20368 Vaccinium macrocarpon HOM05D000046 ORTHO05D004582 3.1e-30 136.3 240 44.6
Glyma.03G035300 Glycine max HOM05D000046 ORTHO05D004582 6.8e-30 135.2 302 37.7
Sed0013055 Sechium edule HOM05D000046 ORTHO05D004582 2.0e-29 133.7 235 42.1
CDE06G1962 Ceratophyllum demersum HOM05D000046 ORTHO05D004582 4.4e-29 132.5 231 42.9
HanXRQChr15g0463601 Helianthus annuus HOM05D000046 ORTHO05D004582 7.5e-29 131.7 258 40.3
EL10Ac7g17083 Beta vulgaris HOM05D000046 ORTHO05D004582 9.9e-29 131.3 238 42.0
CDE07G1141 Ceratophyllum demersum HOM05D000046 ORTHO05D004582 1.3e-28 131.0 239 41.0
Os01g0822200 Oryza sativa ssp. japonica HOM05D000046 ORTHO05D004582 4.9e-28 129.0 242 44.6
PSO017G4674 Papaver somniferum HOM05D000046 ORTHO05D004582 6.4e-28 128.6 246 41.1
Oeu063850.1 Olea europaea HOM05D000046 ORTHO05D004582 1.9e-27 127.1 259 40.2
VMungo0331G1457 Vigna mungo HOM05D000046 ORTHO05D004582 1.9e-27 127.1 299 36.8
Phvul.010G070100 Phaseolus vulgaris HOM05D000046 ORTHO05D004582 4.1e-27 125.9 301 35.5
TPR.G14137 Trifolium pratense HOM05D000046 ORTHO05D004582 1.2e-26 124.4 128 57.0
DCAR_023982 Daucus carota HOM05D000046 ORTHO05D004582 1.6e-26 124.0 254 39.0
ECA247G0102 Erigeron canadensis HOM05D000046 ORTHO05D004582 3.5e-26 122.9 254 39.4
Nitab4.5_0004433g0020 Nicotiana tabacum HOM05D000046 ORTHO05D004582 3.9e-25 119.4 227 41.4
Sed0027442 Sechium edule HOM05D000046 ORTHO05D004582 3.9e-25 119.4 235 41.3
Zm00001eb149520 Zea mays HOM05D000046 ORTHO05D004582 8.6e-25 118.2 247 41.3
MELO3C025222.2 Cucumis melo HOM05D000046 ORTHO05D004582 3.3e-24 116.3 212 45.3
Glyma.01G132866 Glycine max HOM05D000046 ORTHO05D004582 3.8e-20 102.8 160 41.2
Lsat_1_v5_gn_9_39001 Lactuca sativa HOM05D000046 ORTHO05D004582 8.4e-20 101.7 135 44.4
Oeu064870.1 Olea europaea HOM05D000046 ORTHO05D004582 8.4e-20 101.7 247 40.9
DCAR_028913 Daucus carota HOM05D000046 ORTHO05D004582 3.2e-19 99.8 254 35.4
Lj3g0026195 Lotus japonicus HOM05D000046 ORTHO05D004582 4.1e-19 99.4 303 31.4
Lalb_Chr07g0190411 Lupinus albus HOM05D000046 ORTHO05D004582 7.8e-18 95.1 236 35.2
TPR.G4980 Trifolium pratense HOM05D000046 ORTHO05D004582 5.6e-16 89.0 246 35.8
Medtr4g028140 Medicago truncatula HOM05D000046 ORTHO05D004582 1.3e-12 77.8 281 27.4
Ca_26792_v3 Cicer arietinum L. HOM05D000046 ORTHO05D004582 3.8e-12 76.3 78 50.0
Actinidia27259 Actinidia chinensis HOM05D000046 ORTHO05D004582 6.0e-10 68.9 173 35.3
Psat0s305g0120 Pisum sativum HOM05D000046 ORTHO05D004582 3.9e-09 66.2 281 29.9
arahy.Tifrunner.gnm1.ann1.NI121C Arachis hypogaea HOM05D000046 ORTHO05D004582 9.6e-08 61.6 153 34.0
CDE04G2696 Ceratophyllum demersum HOM05D000046 ORTHO05D004582 8.1e-07 58.5 85 40.0
arahy.Tifrunner.gnm1.ann1.1483NE Arachis hypogaea HOM05D000046 ORTHO05D004582 1.4e-06 57.8 90 41.1
HPP92_028208 Vanilla planifolia HOM05D000046 ORTHO05D004582 5.3e-06 55.8 123 39.0


User provided reference genes

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