Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 5.3e-118 427.9 254 100.0
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 5.1e-97 358.2 276 83.0
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 6.9e-94 347.8 276 75.0
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 8.8e-81 304.3 276 67.4
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 3.3e-80 302.4 276 67.4
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 1.8e-78 296.6 277 63.2
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 8.8e-73 277.7 278 62.2
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 2.2e-71 273.1 278 61.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 2.8e-71 272.7 278 61.2
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 1.6e-69 266.9 277 60.6
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.0e-68 264.2 278 60.1
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.0e-68 264.2 278 60.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 1.3e-68 263.8 278 60.1
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 2.5e-67 259.6 278 59.4
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.8e-65 253.4 272 59.6
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.8e-65 253.4 278 60.1
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.2e-64 250.8 278 58.3
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 8.0e-58 228.0 207 60.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 2.2e-55 219.9 273 52.7
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 9.2e-54 214.5 206 57.8
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.0e-53 213.4 208 56.2
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 5.6e-51 205.3 205 55.6
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.6e-50 202.6 217 52.1
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 8.0e-50 201.4 206 55.3
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.2e-48 197.6 196 56.6
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 3.4e-48 196.1 272 44.5
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 5.8e-48 195.3 218 52.3
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.7e-47 193.7 216 52.3
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 2.9e-47 193.0 214 52.3
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 6.4e-47 191.8 207 52.2
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.1e-46 191.0 276 44.2
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.1e-46 191.0 218 50.5
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 1.4e-46 190.7 203 52.7
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 1.4e-46 190.7 216 51.4
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.4e-46 189.9 265 44.9
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 4.1e-46 189.1 248 47.6
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 7.0e-46 188.3 208 53.4
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 9.2e-46 188.0 205 51.7
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.6e-45 187.2 218 50.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 2.0e-45 186.8 218 50.9
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 6.0e-45 185.3 216 51.4
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 6.0e-45 185.3 206 56.3
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 1.7e-44 183.7 263 46.0
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.3e-44 183.3 196 56.1
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 2.3e-44 183.3 217 49.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.9e-43 180.3 214 48.1
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 5.6e-43 178.7 211 50.7
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 1.2e-42 177.6 218 48.6
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.6e-42 177.2 219 48.4
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 1.6e-42 177.2 203 51.7
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 3.6e-42 176.0 207 49.3
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 3.6e-42 176.0 216 48.1
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 1.1e-41 174.5 206 52.4
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.4e-41 174.1 206 51.5
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.4e-41 174.1 218 46.3
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 5.2e-41 172.2 268 43.7
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 5.2e-41 172.2 218 47.7
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.2e-40 171.0 207 50.7
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.6e-40 169.9 207 50.2
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.6e-40 169.9 220 50.9
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 3.4e-40 169.5 207 50.7
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 5.8e-40 168.7 219 46.6
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.3e-39 167.5 207 48.3
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.7e-39 167.2 206 49.5
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.7e-39 167.2 206 49.5
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.2e-39 166.8 215 50.7
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.2e-39 166.8 218 47.7
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 2.9e-39 166.4 215 50.7
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 3.7e-39 166.0 206 49.5
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.4e-38 164.1 206 48.1
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 2.4e-38 163.3 179 52.0
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 5.4e-38 162.2 217 45.2
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 7.1e-38 161.8 219 46.1
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.2e-37 161.0 206 47.1
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 1.6e-37 160.6 215 49.3
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 2.7e-37 159.8 200 48.5
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.6e-37 159.1 158 57.0
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 7.8e-37 158.3 214 49.5
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.0e-36 157.9 220 43.6
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 1.3e-36 157.5 224 46.9
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 3.0e-36 156.4 216 45.8
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 3.0e-36 156.4 207 47.8
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 6.6e-36 155.2 212 47.6
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.5e-35 154.1 206 47.6
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.5e-35 154.1 221 43.9
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 1.9e-35 153.7 206 46.6
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.5e-35 153.3 220 44.5
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 5.6e-35 152.1 208 44.7
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 7.3e-35 151.8 219 43.8
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 9.5e-35 151.4 207 44.0
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.8e-33 147.1 218 42.7
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.8e-33 147.1 218 45.9
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 4.0e-33 146.0 213 44.1
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.0e-32 143.7 207 44.4
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 4.4e-32 142.5 206 43.7
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 5.8e-32 142.1 207 44.0
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 7.6e-32 141.7 218 44.5
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 6.4e-31 138.7 211 44.1
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 8.4e-31 138.3 121 57.9
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.9e-30 137.1 221 41.2
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 3.2e-30 136.3 208 43.3
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-29 134.4 179 45.8
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.2e-29 134.4 215 40.9
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.8e-29 131.7 206 42.7
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.7e-28 130.6 221 43.0
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.7e-28 130.6 220 40.9
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 2.3e-28 130.2 222 41.0
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 3.0e-28 129.8 200 40.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 3.0e-28 129.8 223 39.0
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.9e-28 129.4 182 45.6
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 3.9e-28 129.4 126 57.1
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.9e-27 127.1 234 41.0
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 2.1e-26 123.6 210 40.5
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 4.7e-26 122.5 182 43.4
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 6.2e-26 122.1 272 34.2
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.1e-25 121.3 192 41.1
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.4e-25 120.9 190 43.2
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 5.2e-25 119.0 109 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 7.1e-22 108.6 217 35.0
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 4.6e-21 105.9 67 76.1
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.1e-20 102.4 209 34.0
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 6.6e-20 102.1 114 50.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.5e-19 100.1 207 31.9
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 3.3e-19 99.8 120 45.0
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.6e-19 99.0 203 33.0
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 7.3e-19 98.6 229 34.1
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.0e-16 90.5 74 59.5
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.7e-15 87.4 79 55.7
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.1e-14 84.7 181 32.6
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 7.9e-13 78.6 61 63.9
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 5.6e-11 72.4 80 46.2
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 9.6e-11 71.6 205 27.8
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 2.8e-10 70.1 215 27.0
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.0e-08 63.9 43 72.1
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 1.4e-06 57.8 75 45.3
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.9e-06 57.4 213 25.8
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 9.3e-06 55.1 44 61.4


User provided reference genes

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