Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.9e-113 412.9 276 100.0
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 8.6e-98 360.9 276 83.0
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 2.5e-97 359.4 276 84.4
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 9.5e-97 357.5 276 84.4
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 3.4e-94 349.0 276 74.3
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 2.1e-88 329.7 278 78.1
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 3.1e-87 325.9 278 78.1
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 4.0e-87 325.5 278 77.3
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 5.8e-86 321.6 277 77.6
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 3.8e-85 318.9 278 77.0
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 3.8e-85 318.9 278 77.0
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 4.9e-85 318.5 278 77.0
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 9.2e-84 314.3 278 76.3
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 4.3e-81 305.4 278 75.9
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.1e-79 300.8 278 73.4
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 4.0e-79 298.9 272 73.5
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 2.4e-76 289.7 277 61.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.8e-58 230.3 273 61.5
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 9.6e-57 224.6 207 58.9
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 6.2e-56 221.9 205 74.6
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 8.2e-56 221.5 208 65.9
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 4.0e-55 219.2 216 67.1
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 2.6e-54 216.5 196 71.9
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.9e-53 213.0 207 68.6
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 3.8e-53 212.6 263 59.3
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 4.9e-53 212.2 211 64.9
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 6.5e-53 211.8 207 68.1
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 2.5e-52 209.9 206 66.5
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 7.1e-52 208.4 216 64.4
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 3.5e-51 206.1 206 54.9
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 6.0e-51 205.3 206 58.3
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.3e-50 204.1 202 67.8
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.3e-50 204.1 202 67.8
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.3e-50 204.1 276 48.9
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.3e-50 203.4 220 67.7
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 6.7e-50 201.8 208 53.4
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.1e-49 201.1 272 45.6
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.3e-49 199.5 205 53.2
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.6e-48 197.2 207 58.0
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.6e-48 197.2 207 66.7
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.2e-48 196.8 217 49.8
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 4.8e-48 195.7 206 64.1
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 6.3e-48 195.3 265 49.4
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.1e-47 194.5 200 66.5
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.1e-47 194.5 218 61.0
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 2.4e-47 193.4 220 59.5
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 3.1e-47 193.0 196 55.1
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 5.3e-47 192.2 218 55.5
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 5.3e-47 192.2 206 64.6
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.9e-47 191.8 220 61.4
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 9.0e-47 191.4 217 57.6
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.6e-46 189.9 196 66.8
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 2.6e-46 189.9 206 63.6
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 3.4e-46 189.5 214 64.5
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 3.4e-46 189.5 207 65.2
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 4.5e-46 189.1 215 65.6
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 4.5e-46 189.1 218 52.8
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 1.0e-45 188.0 216 50.5
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.0e-45 188.0 218 63.3
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.7e-45 187.2 212 63.2
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 2.2e-45 186.8 216 50.9
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 6.5e-45 185.3 224 61.2
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 8.5e-45 184.9 268 54.1
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 2.5e-44 183.3 207 61.4
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 4.2e-44 182.6 218 61.9
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 5.5e-44 182.2 206 52.9
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 5.5e-44 182.2 221 59.3
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 7.2e-44 181.8 205 50.7
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 9.4e-44 181.4 203 49.8
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.6e-43 180.6 214 49.1
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.6e-43 180.6 218 54.1
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.6e-43 180.6 218 48.6
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 6.1e-43 178.7 211 62.1
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 7.9e-43 178.3 248 46.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.4e-42 177.6 218 49.1
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 3.0e-42 176.4 207 50.2
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.1e-41 174.5 217 47.5
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.5e-41 174.1 219 57.5
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.3e-41 172.6 219 47.5
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 2.2e-40 170.2 216 58.8
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 2.2e-40 170.2 206 59.7
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.8e-40 169.9 200 59.5
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 2.8e-40 169.9 207 57.0
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 3.7e-40 169.5 218 45.0
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 4.8e-40 169.1 218 46.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 6.3e-40 168.7 214 45.8
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.1e-39 167.9 234 57.3
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.8e-39 167.2 204 61.3
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 2.4e-39 166.8 220 58.6
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 6.9e-39 165.2 141 60.3
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 5.9e-38 162.2 215 54.9
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.0e-37 161.4 206 59.7
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.3e-37 161.0 220 55.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.7e-37 160.6 190 63.2
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 3.8e-37 159.5 219 44.7
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.5e-36 156.8 215 48.4
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 2.5e-36 156.8 208 50.5
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 3.2e-36 156.4 215 48.4
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 3.2e-36 156.4 223 53.8
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 4.2e-36 156.0 218 54.6
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.2e-35 154.5 158 55.1
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 1.6e-35 154.1 145 57.9
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 6.1e-35 152.1 213 50.7
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.4e-34 151.0 207 56.5
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.8e-34 150.6 219 43.4
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 3.9e-34 149.4 207 56.0
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 1.1e-33 147.9 206 54.9
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 3.3e-33 146.4 208 55.8
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.3e-32 144.4 127 59.1
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.2e-32 143.7 221 52.0
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.8e-31 140.6 130 57.7
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.5e-30 137.5 221 53.8
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 1.9e-28 130.6 210 52.4
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 4.2e-28 129.4 179 44.7
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.5e-28 129.0 272 43.4
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.2e-27 127.9 135 52.6
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 6.1e-27 125.6 182 54.9
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 2.6e-25 120.2 210 50.0
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.3e-25 119.8 182 50.0
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 8.2e-24 115.2 132 47.0
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 3.8e-21 106.3 217 32.7
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 3.6e-19 99.8 229 32.8
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 8.0e-19 98.6 203 32.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.0e-18 98.2 207 29.5
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 8.8e-18 95.1 209 31.1
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.8e-15 87.4 79 55.7
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 1.8e-15 87.4 98 50.0
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.6e-14 84.3 181 31.5
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.6e-11 74.3 205 27.8
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 6.1e-11 72.4 80 46.2
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 4.4e-09 66.2 215 25.1
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 1.3e-08 64.7 38 78.9
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.7e-08 64.3 43 72.1
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.4e-07 61.2 213 25.4
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 3.5e-06 56.6 45 60.0
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 5.9e-06 55.8 44 61.4


User provided reference genes

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