Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 2.2e-166 589.0 308 100.0
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 8.8e-160 567.0 309 97.1
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 6.8e-152 540.8 319 90.0
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.0e-144 516.9 339 78.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 7.8e-140 500.7 314 81.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 7.8e-140 500.7 337 77.4
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.1e-138 496.9 312 81.1
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 2.5e-138 495.7 322 78.3
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 6.2e-137 491.1 321 78.5
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.8e-136 489.6 311 80.7
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 8.3e-134 480.7 299 80.6
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.2e-133 478.8 317 80.8
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 5.4e-133 478.0 301 80.7
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 6.0e-132 474.6 298 80.9
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.5e-130 469.9 328 75.0
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.7e-118 429.9 358 64.0
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.7e-118 429.9 348 65.2
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.2e-113 413.7 258 76.4
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 5.2e-112 408.3 328 64.6
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 6.9e-112 407.9 343 62.1
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.5e-111 406.8 354 60.7
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.0e-111 406.4 329 63.8
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.0e-111 406.4 356 59.0
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.3e-110 403.7 340 62.1
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 2.2e-110 402.9 358 58.9
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.9e-110 402.5 357 60.2
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 3.8e-110 402.1 361 58.4
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 6.4e-110 401.4 356 58.4
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.4e-110 401.0 358 58.9
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.4e-110 401.0 358 58.9
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.1e-109 400.6 351 59.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.4e-109 400.2 356 58.4
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.4e-109 399.4 361 59.6
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.2e-109 398.7 357 58.8
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 9.3e-109 397.5 352 59.4
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.2e-108 397.1 352 54.3
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.2e-108 397.1 362 57.2
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.6e-108 396.7 366 56.8
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 3.5e-108 395.6 349 57.9
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.5e-108 395.6 361 57.3
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.0e-108 394.8 359 53.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.0e-107 394.0 326 62.9
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.3e-107 393.7 345 60.0
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.3e-107 393.7 356 58.4
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.1e-107 391.7 356 57.0
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 5.1e-107 391.7 380 55.5
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 8.7e-107 391.0 362 58.8
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.1e-106 390.6 362 56.9
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.1e-106 390.6 359 57.1
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.5e-106 390.2 359 57.1
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-106 389.8 356 59.3
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.9e-106 389.8 362 56.6
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.5e-106 389.4 224 75.9
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.3e-106 389.0 359 57.1
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.3e-106 389.0 364 57.4
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 4.3e-106 388.7 362 57.5
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 4.3e-106 388.7 345 59.1
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 4.3e-106 388.7 359 56.5
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 5.6e-106 388.3 361 57.6
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 7.3e-106 387.9 358 56.7
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.3e-105 387.1 346 59.0
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.1e-105 386.3 360 57.8
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 2.8e-105 386.0 349 57.9
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.8e-105 386.0 360 57.5
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 8.1e-105 384.4 323 61.6
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.1e-104 384.0 360 56.9
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.4e-104 383.6 358 55.3
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.4e-104 382.9 312 62.2
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 5.3e-104 381.7 359 54.6
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.0e-103 379.8 358 55.9
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.5e-103 378.6 423 50.8
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 5.8e-103 378.3 363 54.8
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 5.8e-103 378.3 363 54.8
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 7.6e-103 377.9 363 53.4
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 9.9e-103 377.5 347 56.8
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.7e-102 376.7 344 57.3
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 1.7e-102 376.7 223 72.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 3.8e-102 375.6 326 59.8
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.8e-102 375.6 363 55.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.2e-101 372.5 363 54.5
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.6e-100 370.2 341 51.6
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 7.9e-100 367.9 293 65.5
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.0e-99 367.5 296 65.2
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.8e-99 366.7 351 57.3
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.8e-99 366.7 332 56.0
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.8e-99 366.7 310 55.8
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.8e-99 366.7 366 54.1
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.3e-99 366.3 319 61.4
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.3e-99 366.3 359 53.8
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 3.0e-99 365.9 314 55.4
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.0e-99 365.9 343 54.5
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 6.7e-99 364.8 351 55.6
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.5e-98 363.6 357 53.8
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.9e-98 363.2 218 73.4
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.9e-98 363.2 327 59.0
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 2.5e-98 362.8 335 54.6
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 5.6e-98 361.7 357 53.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.6e-98 360.9 371 51.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.6e-97 360.1 295 64.4
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 2.1e-97 359.8 327 59.0
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.4e-96 357.1 318 61.0
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.0e-96 355.5 213 71.8
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.2e-95 354.0 337 56.7
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 7.6e-95 351.3 327 57.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 3.8e-94 349.0 319 57.4
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 8.4e-94 347.8 322 58.4
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.4e-93 346.3 346 56.1
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 5.5e-93 345.1 322 57.5
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.1e-92 343.2 328 55.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.1e-92 343.2 328 55.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 4.6e-92 342.0 322 57.1
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 6.0e-92 341.7 328 55.8
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.0e-91 340.9 306 59.5
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 3.9e-91 339.0 319 55.5
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 7.4e-90 334.7 328 54.9
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.1e-88 330.9 188 76.6
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.6e-87 326.2 313 58.1
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 4.9e-86 322.0 188 74.5
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 5.5e-85 318.5 190 73.7
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.0e-83 314.3 268 53.7
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 5.7e-82 308.5 317 52.7
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 4.8e-81 305.4 217 58.1
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.8e-80 303.5 297 53.2
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.2e-79 300.8 313 51.4
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.9e-78 296.2 284 55.3
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 3.8e-78 295.8 318 54.4
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 5.0e-78 295.4 222 55.0
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 6.5e-78 295.0 297 56.2
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 6.5e-78 295.0 188 67.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 8.5e-78 294.7 247 56.7
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.1e-77 294.3 325 44.6
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.2e-76 290.8 263 52.9
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 8.8e-75 284.6 291 54.3
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 8.8e-75 284.6 274 50.4
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.3e-74 282.7 292 53.4
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.4e-72 276.6 343 48.7
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 6.5e-70 268.5 318 42.5
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.2e-68 264.2 311 45.7
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.2e-68 264.2 296 50.7
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.0e-67 261.2 315 46.0
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.4e-67 260.8 191 60.7
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 2.3e-67 260.0 189 61.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.1e-66 257.7 191 60.7
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 4.4e-66 255.8 187 59.9
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 5.7e-66 255.4 314 47.1
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.8e-65 253.1 322 40.4
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.7e-65 252.7 328 43.0
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.8e-65 252.3 309 44.3
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.8e-65 252.3 303 47.9
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.1e-64 251.1 311 48.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 7.0e-64 248.4 318 46.5
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 4.5e-63 245.7 321 46.1
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 7.7e-63 245.0 315 43.5
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 6.5e-62 241.9 318 47.2
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.1e-60 236.9 262 46.2
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 6.5e-54 215.3 220 42.7
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 3.7e-49 199.5 236 41.1
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.1e-48 198.0 313 40.9
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-47 194.5 178 51.1
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.2e-47 194.5 272 44.1
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.5e-47 193.0 239 42.3
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.0e-43 181.4 108 72.2
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 3.4e-42 176.4 108 71.3
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.8e-40 170.6 93 78.5
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 3.9e-14 83.2 102 37.3
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.4e-11 74.7 48 66.7
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.8e-11 74.3 38 78.9


User provided reference genes

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