Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 1.9e-75 285.8 151 100.0
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 1.9e-75 285.8 151 100.0
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 1.9e-70 269.2 151 95.4
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 4.3e-59 231.5 151 78.1
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 1.4e-57 226.5 152 77.6
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 1.5e-56 223.0 149 79.2
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 2.9e-55 218.8 151 72.2
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 9.3e-54 213.8 153 73.9
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 6.0e-53 211.1 152 74.3
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 2.3e-52 209.1 152 73.7
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 1.9e-51 206.1 151 72.8
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 1.9e-51 206.1 151 72.8
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 9.6e-51 203.8 153 73.9
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 2.1e-50 202.6 145 73.8
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 4.8e-50 201.4 151 72.8
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 4.8e-50 201.4 151 72.8
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 2.4e-49 199.1 153 70.6
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 3.4e-48 195.3 150 76.0
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.3e-47 193.4 154 76.0
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 8.2e-42 174.1 154 64.9
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 5.9e-32 141.4 162 59.3
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 4.7e-21 105.1 157 46.5
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 1.4e-20 103.6 166 51.2
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 2.3e-20 102.8 164 43.9
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 3.0e-20 102.4 167 42.5
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 3.9e-20 102.1 171 47.4
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 3.9e-20 102.1 165 46.1
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-19 100.5 166 44.6
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 1.1e-19 100.5 160 45.0
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 1.1e-19 100.5 166 44.6
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 1.1e-19 100.5 166 44.6
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 1.5e-19 100.1 157 43.3
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 2.0e-19 99.8 163 44.8
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 2.0e-19 99.8 163 44.8
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 2.0e-19 99.8 163 44.8
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 3.3e-19 99.0 161 44.1
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 5.7e-19 98.2 169 48.5
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 9.7e-19 97.4 166 42.8
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 9.7e-19 97.4 166 42.8
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.3e-18 97.1 167 47.9
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 2.2e-18 96.3 160 44.4
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 2.8e-18 95.9 165 43.6
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 2.8e-18 95.9 165 43.6
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 2.8e-18 95.9 163 47.9
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 3.7e-18 95.5 165 46.7
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 2.2e-15 86.3 158 40.5
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 4.7e-13 78.6 120 44.2
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 4.7e-13 78.6 101 43.6
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 1.0e-12 77.4 103 43.7
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 1.4e-12 77.0 97 48.5
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 1.4e-12 77.0 103 44.7
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 2.3e-12 76.3 90 45.6
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 2.3e-12 76.3 152 40.1
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 4.0e-12 75.5 107 43.9
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 6.7e-12 74.7 110 40.9
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 8.8e-12 74.3 118 39.8
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 8.8e-12 74.3 107 44.9
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 8.8e-12 74.3 88 46.6
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 8.8e-12 74.3 88 46.6
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 8.8e-12 74.3 88 46.6
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 8.8e-12 74.3 110 40.9
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 2.0e-11 73.2 97 45.4
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 2.0e-11 73.2 87 50.6
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 2.6e-11 72.8 107 41.1
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 2.6e-11 72.8 101 44.6
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 3.3e-11 72.4 88 45.5
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 7.5e-11 71.2 103 42.7
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 7.5e-11 71.2 112 40.2
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 7.5e-11 71.2 101 41.6
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 9.7e-11 70.9 107 45.8
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 3.7e-10 68.9 99 45.5
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 8.2e-10 67.8 89 48.3
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 2.4e-09 66.2 112 39.3
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 2.4e-09 66.2 106 41.5
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.4e-09 66.2 89 43.8
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 3.1e-09 65.9 102 42.2
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 3.1e-09 65.9 88 44.3
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 4.1e-09 65.5 90 42.2
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 5.3e-09 65.1 96 42.7
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 5.3e-09 65.1 106 38.7
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 7.0e-09 64.7 101 45.5
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 7.0e-09 64.7 100 44.0
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 7.0e-09 64.7 90 45.6
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 1.2e-08 63.9 102 40.2
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 1.2e-08 63.9 118 39.8
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 1.2e-08 63.9 87 44.8
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 1.2e-08 63.9 107 43.0
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.6e-08 63.5 102 41.2
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 1.6e-08 63.5 107 41.1
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 2.7e-08 62.8 101 40.6
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 2.7e-08 62.8 106 42.5
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 3.5e-08 62.4 102 40.2
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 4.5e-08 62.0 106 40.6
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 4.5e-08 62.0 102 43.1
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 5.9e-08 61.6 104 41.3
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 1.0e-07 60.8 110 40.9
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 1.3e-07 60.5 100 43.0
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 1.3e-07 60.5 84 47.6
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 1.3e-07 60.5 121 38.0
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.7e-07 60.1 82 42.7
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 1.7e-07 60.1 100 40.0
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 1.7e-07 60.1 104 41.3
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 1.7e-07 60.1 99 41.4
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 1.7e-07 60.1 126 36.5
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.9e-07 59.3 84 41.7
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.9e-07 59.3 84 41.7
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 2.9e-07 59.3 93 40.9
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 3.8e-07 58.9 106 35.8
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 5.0e-07 58.5 107 40.2
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 5.0e-07 58.5 121 36.4
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 5.0e-07 58.5 83 42.2
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 6.5e-07 58.2 101 36.6
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 6.5e-07 58.2 102 40.2
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 8.5e-07 57.8 86 44.2
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 8.5e-07 57.8 86 44.2
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 8.5e-07 57.8 110 35.5
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 8.5e-07 57.8 91 40.7
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 8.5e-07 57.8 148 32.4
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 1.1e-06 57.4 118 33.9
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 1.5e-06 57.0 111 36.0
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 1.5e-06 57.0 86 41.9
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 1.9e-06 56.6 125 40.0
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 2.5e-06 56.2 89 39.3
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 3.2e-06 55.8 117 32.5


User provided reference genes

Program Settings