Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.5e-108 396.4 225 100.0
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.8e-106 389.4 227 98.7
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 7.6e-76 287.7 228 79.4
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 8.9e-69 264.2 238 71.0
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 6.4e-67 258.1 234 70.9
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 4.2e-66 255.4 234 70.5
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 7.1e-66 254.6 235 69.8
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 7.1e-66 254.6 235 69.8
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.9e-63 246.5 246 67.9
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 3.3e-63 245.7 245 65.7
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 5.3e-61 238.4 247 67.2
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 6.9e-61 238.0 248 66.1
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.3e-59 233.8 243 64.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.0e-56 222.6 247 63.6
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.1e-53 214.2 240 61.7
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 3.9e-48 195.7 240 53.3
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 7.6e-44 181.4 245 53.9
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 2.2e-43 179.9 242 56.2
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.9e-43 179.5 243 54.7
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 1.2e-41 174.1 240 54.2
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.2e-41 174.1 237 52.7
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.1e-41 173.3 254 49.6
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.0e-40 171.0 256 49.2
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.0e-40 171.0 233 53.2
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 5.1e-40 168.7 243 50.6
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.5e-39 166.4 243 53.5
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 5.7e-39 165.2 237 48.1
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 9.6e-39 164.5 261 49.0
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.6e-39 164.5 242 45.9
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.3e-38 164.1 237 51.5
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.6e-38 163.7 238 50.0
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.1e-38 163.3 236 51.7
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.7e-38 162.5 228 50.4
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 4.8e-38 162.2 234 46.6
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 6.3e-38 161.8 238 49.6
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 6.3e-38 161.8 244 48.8
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 8.2e-38 161.4 232 45.3
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-37 161.0 224 54.5
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 1.1e-37 161.0 190 59.5
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.4e-37 160.6 234 50.4
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.4e-37 159.8 245 49.4
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 3.1e-37 159.5 265 50.2
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 3.1e-37 159.5 265 50.2
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 3.1e-37 159.5 261 48.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 6.9e-37 158.3 181 53.6
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 6.9e-37 158.3 227 51.5
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 2.0e-36 156.8 250 50.8
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 2.6e-36 156.4 246 46.7
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 3.4e-36 156.0 225 49.8
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 4.5e-36 155.6 232 44.8
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 5.9e-36 155.2 267 49.1
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 5.9e-36 155.2 267 49.1
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 7.6e-36 154.8 249 46.6
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.0e-35 154.5 238 42.9
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.0e-35 154.5 239 43.1
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.0e-35 154.5 239 47.3
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.0e-35 154.5 237 44.7
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.0e-35 154.5 256 50.0
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.3e-35 154.1 239 42.7
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.3e-35 154.1 235 43.0
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.2e-35 153.3 232 46.1
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 2.9e-35 152.9 222 51.4
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 2.9e-35 152.9 233 47.2
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 3.8e-35 152.5 233 43.8
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 3.8e-35 152.5 248 46.0
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.0e-35 152.1 195 54.9
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 1.1e-34 151.0 195 52.8
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.4e-34 150.6 235 48.1
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.5e-34 149.8 245 46.1
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 3.2e-34 149.4 213 50.2
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 3.2e-34 149.4 218 51.4
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 5.5e-34 148.7 225 44.9
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 5.5e-34 148.7 245 49.8
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 7.2e-34 148.3 243 42.4
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 7.2e-34 148.3 211 49.3
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.3e-34 147.9 252 44.4
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.2e-33 147.5 228 46.1
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.6e-33 147.1 237 44.7
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.6e-33 147.1 245 50.2
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 1.6e-33 147.1 243 41.2
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 2.1e-33 146.7 200 51.5
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 2.1e-33 146.7 190 48.4
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.5e-33 146.0 236 44.5
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 3.5e-33 146.0 245 46.5
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 3.5e-33 146.0 231 51.9
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.5e-33 146.0 243 45.7
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.6e-33 145.6 210 49.5
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 7.9e-33 144.8 236 42.4
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.3e-32 144.1 261 45.6
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.8e-32 143.7 261 43.7
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.8e-32 143.7 182 55.5
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.8e-32 143.7 195 53.3
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 3.9e-32 142.5 208 51.9
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 5.1e-32 142.1 239 40.6
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 8.7e-32 141.4 221 50.7
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.1e-31 141.0 235 42.1
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.1e-31 141.0 202 46.0
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.5e-31 140.6 246 48.8
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.5e-31 139.8 234 46.2
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 3.3e-31 139.4 241 46.5
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 3.3e-31 139.4 237 45.1
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 3.3e-31 139.4 237 40.9
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 4.3e-31 139.0 213 44.1
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 5.7e-31 138.7 232 44.8
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.3e-30 137.5 245 44.9
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.6e-30 137.1 231 41.1
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 3.7e-30 136.0 245 42.4
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 6.3e-30 135.2 236 44.1
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-29 134.0 243 49.8
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 1.4e-29 134.0 236 46.6
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.4e-29 134.0 241 46.9
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.4e-29 134.0 236 44.9
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.8e-29 133.7 285 38.9
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-29 133.7 227 43.2
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 3.1e-29 132.9 237 46.4
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 6.9e-29 131.7 229 43.7
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 3.4e-28 129.4 179 48.0
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 3.4e-28 129.4 234 47.4
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 7.7e-28 128.3 262 43.1
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 7.7e-28 128.3 248 46.8
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 7.7e-28 128.3 202 44.6
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.0e-27 127.9 224 40.2
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 3.8e-27 125.9 266 42.1
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 8.5e-27 124.8 203 45.8
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 8.5e-27 124.8 177 48.0
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-26 123.6 159 52.8
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.2e-25 120.9 187 48.1
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.7e-25 119.8 223 41.3
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.5e-23 114.0 193 48.7
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 1.7e-22 110.5 172 48.8
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.3e-19 100.9 236 37.7
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.1e-17 93.6 157 36.9
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.3e-14 84.3 147 40.8
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.2e-12 77.8 167 35.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.7e-11 73.9 228 35.5
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 2.2e-11 73.6 41 75.6
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 5.0e-11 72.4 171 33.9
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 5.0e-11 72.4 194 30.9
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 3.2e-10 69.7 139 38.8
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.4e-10 68.2 92 43.5
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.2e-09 67.8 131 41.2
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.1e-09 67.0 92 43.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 5.2e-08 62.4 166 40.4
PGSC0003DMG400022132 Solanum tuberosum HOM05D003370 ORTHO05D003848 9.7e-07 58.2 211 29.4
Nitab4.5_0007742g0010 Nicotiana tabacum HOM05D003370 ORTHO05D003848 1.3e-06 57.8 143 33.6
Aa31LG8G210 Aethionema arabicum HOM05D003370 ORTHO05D003848 3.7e-06 56.2 110 40.0
C06p10920 Brassica napus HOM05D003370 ORTHO05D003848 3.7e-06 56.2 109 37.6
SEGI_26176 Sequoiadendron giganteum HOM05D003370 ORTHO05D003848 3.7e-06 56.2 142 33.1
BcaB07g33177 Brassica carinata HOM05D003370 ORTHO05D003848 6.3e-06 55.5 111 36.9
BcaC08g43669 Brassica carinata HOM05D003370 ORTHO05D003848 6.3e-06 55.5 109 37.6
BolC6t36173H Brassica oleracea HOM05D003370 ORTHO05D003848 6.3e-06 55.5 109 37.6
BraSC56t46389Z Brassica rapa HOM05D003370 ORTHO05D003848 6.3e-06 55.5 110 37.3


User provided reference genes

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