Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 8.8e-134 480.3 248 100.0
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-131 471.1 257 96.1
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 7.9e-127 457.2 275 89.5
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.1e-123 446.8 281 86.5
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 3.4e-101 372.1 257 79.4
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 4.7e-79 298.5 209 77.5
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 3.7e-76 288.9 274 62.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 4.9e-68 261.9 272 62.5
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 4.7e-63 245.4 182 72.5
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.1e-58 229.9 182 69.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 7.3e-56 221.5 222 59.5
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 9.6e-56 221.1 272 54.8
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 4.4e-53 212.2 216 60.2
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.7e-52 210.3 207 59.9
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.1e-50 203.4 272 51.5
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 6.0e-50 201.8 170 65.3
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 7.3e-48 194.9 203 58.6
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 4.8e-47 192.2 259 51.4
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-46 190.3 203 57.1
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.4e-45 186.0 208 54.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 8.7e-41 171.4 213 50.2
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 4.3e-40 169.1 213 50.2
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 4.3e-40 169.1 213 50.2
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 9.6e-40 167.9 213 49.8
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-39 167.5 213 49.8
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-39 166.8 213 49.3
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 2.1e-39 166.8 213 49.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 2.1e-39 166.8 213 49.3
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.8e-39 166.4 162 59.3
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.8e-38 163.7 213 48.8
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 2.4e-38 163.3 213 49.3
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 6.9e-38 161.8 278 42.1
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 9.0e-38 161.4 213 48.8
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.3e-36 157.5 213 46.9
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 2.9e-36 156.4 218 47.2
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 2.9e-36 156.4 218 47.2
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-35 154.5 218 46.8
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.5e-35 153.3 182 48.9
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-33 146.7 210 47.6
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 3.5e-26 122.9 148 54.7
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 3.5e-26 122.9 193 40.9
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 4.6e-26 122.5 197 40.6
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.3e-25 120.9 176 42.6
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 2.3e-25 120.2 193 39.9
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.3e-25 120.2 193 39.9
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 2.3e-25 120.2 194 40.7
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 3.0e-25 119.8 235 37.0
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 3.9e-25 119.4 201 38.3
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.9e-25 119.4 199 37.7
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 5.1e-25 119.0 204 39.7
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 5.1e-25 119.0 178 42.1
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 6.7e-25 118.6 175 39.4
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 6.7e-25 118.6 196 38.8
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 8.7e-25 118.2 225 37.3
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 8.7e-25 118.2 191 39.3
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 8.7e-25 118.2 175 39.4
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.5e-24 117.5 207 40.1
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.5e-24 117.5 204 39.2
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.5e-24 117.5 204 39.2
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.5e-24 117.5 204 38.2
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 1.9e-24 117.1 190 38.4
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.9e-24 117.1 190 38.4
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.5e-24 116.7 188 39.9
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.3e-24 115.9 133 51.1
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 4.3e-24 115.9 225 37.3
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 5.7e-24 115.5 221 35.3
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 5.7e-24 115.5 175 39.4
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 7.4e-24 115.2 217 35.5
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 7.4e-24 115.2 199 38.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 7.4e-24 115.2 175 38.9
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 7.4e-24 115.2 202 37.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 7.4e-24 115.2 210 39.0
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.3e-23 114.4 212 36.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.3e-23 114.4 192 38.5
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-23 114.4 188 39.4
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.6e-23 114.0 193 37.8
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.6e-23 114.0 206 38.8
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.6e-23 114.0 174 41.4
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.6e-23 114.0 202 38.1
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.6e-23 114.0 171 39.2
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.2e-23 113.6 199 37.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 2.2e-23 113.6 198 38.9
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 2.8e-23 113.2 196 37.8
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.8e-23 113.2 184 36.4
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 2.8e-23 113.2 196 39.3
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 3.7e-23 112.8 201 38.8
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 3.7e-23 112.8 215 36.3
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 4.8e-23 112.5 206 37.9
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 6.3e-23 112.1 193 37.8
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 6.3e-23 112.1 185 38.9
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.4e-22 110.9 204 36.8
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.4e-22 110.9 179 38.5
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.4e-22 110.9 220 35.5
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.4e-22 110.9 196 39.3
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.8e-22 110.5 193 39.4
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.8e-22 110.5 205 35.6
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 2.4e-22 110.2 204 39.7
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 3.1e-22 109.8 224 36.6
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 4.1e-22 109.4 188 37.2
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 4.1e-22 109.4 201 36.3
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 6.9e-22 108.6 190 37.4
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 9.0e-22 108.2 198 38.9
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 9.0e-22 108.2 201 36.3
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 9.0e-22 108.2 173 38.7
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.2e-21 107.8 196 37.2
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.2e-21 107.8 228 35.5
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.5e-21 107.5 202 38.1
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.6e-21 106.7 198 38.4
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.6e-21 106.7 197 39.6
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 3.4e-21 106.3 205 37.1
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 3.4e-21 106.3 209 34.9
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 4.5e-21 105.9 202 35.1
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 1.0e-20 104.8 224 33.9
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.7e-20 104.0 193 36.8
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 2.9e-20 103.2 177 39.0
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 3.8e-20 102.8 200 35.5
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 5.0e-20 102.4 202 34.7
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 5.0e-20 102.4 172 37.8
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 6.5e-20 102.1 202 37.1
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 8.5e-20 101.7 200 36.5
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.4e-19 100.9 203 37.9
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 2.5e-19 100.1 197 37.1
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 5.5e-19 99.0 200 36.0
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.2e-18 97.8 208 35.6
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 1.6e-18 97.4 199 36.2
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.1e-18 97.1 181 34.8
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 2.1e-18 97.1 197 33.0
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 4.6e-18 95.9 199 35.7
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 6.1e-18 95.5 198 34.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 3.0e-17 93.2 176 34.1
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 3.9e-17 92.8 183 31.1
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 5.1e-17 92.4 174 33.3
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.5e-16 90.1 224 32.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 3.3e-16 89.7 170 33.5
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.7e-15 87.4 180 32.8
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.3e-15 85.5 142 38.0
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.3e-15 85.5 174 36.2
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 5.3e-14 82.4 131 40.5
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-13 80.5 77 59.7
BraA01t03308Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-11 73.9 59 79.7
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.3e-07 61.2 76 44.7


User provided reference genes

Program Settings