Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 1.5e-118 429.5 210 100.0
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.3e-117 426.4 210 99.5
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.8e-116 422.5 210 98.6
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 2.0e-115 419.1 210 97.6
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 7.5e-110 400.6 210 93.3
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 9.7e-110 400.2 210 92.9
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.4e-108 396.4 210 91.9
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 3.1e-108 395.2 210 92.4
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 4.1e-108 394.8 210 91.9
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.0e-107 392.5 210 91.9
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 2.7e-107 392.1 210 91.4
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.0e-106 390.2 210 91.0
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.3e-106 389.8 211 91.0
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 1.3e-106 389.8 210 90.5
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 2.9e-106 388.7 210 89.0
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 2.9e-106 388.7 210 91.0
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 2.5e-105 385.6 210 90.0
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 3.5e-99 365.2 210 81.4
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.5e-89 333.2 210 73.8
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.2e-88 330.1 201 73.1
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 1.2e-88 330.1 210 71.9
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.0e-87 327.0 201 73.1
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 8.9e-87 323.9 201 74.1
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 2.0e-86 322.8 211 71.1
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.0e-86 322.8 210 71.9
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 5.8e-86 321.2 211 72.0
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 5.8e-86 321.2 198 71.7
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.7e-85 319.7 210 70.0
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.2e-85 319.3 210 70.0
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 4.9e-85 318.2 201 72.6
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.9e-84 316.2 206 70.4
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.9e-84 316.2 201 71.6
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.2e-84 315.5 201 71.6
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 7.0e-84 314.3 210 69.5
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 7.0e-84 314.3 210 68.1
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 7.0e-84 314.3 201 71.6
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.7e-83 312.4 206 68.9
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 2.7e-83 312.4 210 69.0
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.7e-83 312.4 201 71.6
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 3.5e-83 312.0 207 65.7
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 4.6e-83 311.6 204 68.1
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.0e-83 311.2 210 67.6
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 7.8e-83 310.8 210 68.6
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.8e-83 310.8 210 68.1
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.0e-82 310.5 207 65.7
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.0e-82 310.5 201 70.1
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.3e-82 310.1 210 66.7
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 3.0e-82 308.9 210 68.1
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 8.6e-82 307.4 210 67.6
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.1e-81 307.0 209 68.4
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.1e-81 307.0 210 67.1
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.9e-81 306.2 211 65.9
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.9e-81 306.2 207 67.6
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.3e-81 305.4 210 67.6
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 3.3e-81 305.4 206 68.4
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 4.3e-81 305.1 210 67.1
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 9.5e-81 303.9 213 64.3
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.6e-80 303.1 206 68.4
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 2.1e-80 302.8 210 66.2
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 2.1e-80 302.8 210 67.6
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 2.1e-80 302.8 210 63.8
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.1e-80 302.8 206 68.9
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 2.8e-80 302.4 210 66.7
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.8e-80 302.4 210 64.8
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 3.6e-80 302.0 210 67.1
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 3.6e-80 302.0 210 63.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 4.7e-80 301.6 210 65.7
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 6.2e-80 301.2 210 65.7
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 6.2e-80 301.2 210 65.7
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.1e-79 300.4 208 64.9
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.1e-79 300.4 210 66.2
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.1e-79 300.4 210 66.2
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.1e-79 300.4 211 64.0
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.1e-79 300.4 211 64.0
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.1e-79 300.4 210 64.8
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 1.4e-79 300.1 210 67.6
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.1e-79 298.9 210 66.7
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.1e-79 298.9 211 63.5
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 5.2e-79 298.1 206 64.6
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 5.2e-79 298.1 210 66.7
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 5.2e-79 298.1 210 66.2
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.2e-78 297.0 210 63.8
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.2e-78 297.0 210 64.3
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 3.4e-78 295.4 210 63.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 7.5e-78 294.3 210 66.2
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 9.8e-78 293.9 214 61.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 9.8e-78 293.9 210 63.8
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 9.8e-78 293.9 210 65.2
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.3e-77 293.5 199 64.3
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 2.2e-77 292.7 210 65.2
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 2.2e-77 292.7 210 63.8
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.9e-76 289.7 210 61.0
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 3.2e-76 288.9 210 61.9
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 4.1e-76 288.5 210 61.9
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 7.1e-76 287.7 210 62.4
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.2e-75 287.0 210 62.4
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.6e-75 286.6 210 62.4
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 2.7e-75 285.8 206 64.1
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.9e-74 282.0 198 63.6
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 5.6e-73 278.1 239 58.2
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 7.3e-73 277.7 210 64.8
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 9.5e-73 277.3 210 64.8
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 1.2e-70 270.4 284 47.2
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.0e-70 269.6 204 60.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.6e-70 269.2 198 61.6
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.3e-69 266.9 170 78.8
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.7e-69 266.5 220 60.9
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.9e-69 265.8 282 48.6
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.0e-66 257.3 206 60.2
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 9.6e-65 250.8 130 96.9
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 8.9e-63 244.2 205 59.0
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.7e-59 232.6 206 53.9
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 5.1e-58 228.4 205 50.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 4.3e-57 225.3 168 58.9
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 7.8e-51 204.5 138 64.5
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 6.6e-50 201.4 194 49.0
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.6e-48 195.7 188 50.5
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 3.1e-47 192.6 199 46.2
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.0e-46 189.9 127 70.1
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 7.9e-43 177.9 130 62.3
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 2.5e-41 172.9 117 64.1
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 6.2e-40 168.3 130 63.1
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.3e-37 160.6 102 68.6
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.2e-37 159.8 109 69.7
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 8.7e-34 147.9 145 51.0
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.1e-33 147.5 109 64.2
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 5.7e-33 145.2 143 44.8
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.4e-33 144.8 109 65.1
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.4e-31 139.8 112 60.7
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.5e-28 129.8 80 70.0
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.3e-26 123.2 78 62.8
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 4.3e-25 119.0 78 60.3
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.1e-23 114.4 80 57.5
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 7.7e-22 108.2 90 57.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.5e-20 102.1 74 60.8
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 1.7e-08 63.9 27 100.0


User provided reference genes

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