Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 4.8e-249 864.0 423 100.0
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.9e-136 490.0 281 87.9
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 4.2e-136 488.8 281 87.9
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 4.2e-136 488.8 281 87.9
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.6e-135 486.9 281 87.5
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.6e-135 486.9 281 87.5
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 1.9e-128 463.4 283 81.6
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.7e-127 458.8 283 80.9
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.5e-122 443.7 281 77.6
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.9e-104 383.6 234 82.1
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.4e-99 367.5 222 80.2
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.8e-97 359.4 294 60.5
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.4e-91 340.1 313 56.5
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 5.0e-89 332.4 317 54.9
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.5e-88 330.9 314 55.1
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 5.6e-88 328.9 314 54.8
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 7.3e-88 328.6 314 54.8
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 7.3e-88 328.6 314 54.8
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 7.3e-88 328.6 318 53.8
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-87 327.8 317 53.3
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 4.7e-87 325.9 319 52.7
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 6.8e-86 322.0 317 52.4
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 4.9e-84 315.8 322 51.2
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-83 314.7 295 52.9
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.4e-83 313.5 306 51.3
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 9.2e-83 311.6 317 51.4
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.2e-82 311.2 282 53.5
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.7e-82 310.1 302 52.6
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.7e-82 310.1 333 56.5
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 2.7e-82 310.1 322 50.0
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 3.5e-82 309.7 283 53.7
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.6e-82 309.3 305 51.1
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 7.8e-82 308.5 313 50.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 3.0e-81 306.6 322 50.0
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 3.9e-81 306.2 317 49.8
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 5.0e-81 305.8 321 50.5
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.1e-80 304.7 303 51.5
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 3.3e-80 303.1 322 49.1
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 4.3e-80 302.8 303 51.2
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 7.3e-80 302.0 303 50.8
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.2e-79 301.2 322 49.1
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.6e-79 300.8 321 47.4
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 1.6e-79 300.8 321 48.9
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.6e-79 300.8 301 50.5
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 2.8e-79 300.1 313 49.2
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 4.7e-79 299.3 324 47.2
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 6.2e-79 298.9 319 48.0
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 8.0e-79 298.5 301 51.2
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 8.0e-79 298.5 313 50.2
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.1e-78 298.1 319 48.0
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.1e-78 298.1 289 51.2
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.4e-78 297.7 298 49.7
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 2.3e-78 297.0 304 49.7
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-78 296.6 289 51.6
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-78 296.6 289 51.2
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.1e-78 296.6 282 51.8
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 4.0e-78 296.2 318 48.4
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.2e-78 295.8 319 48.3
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.2e-78 295.8 289 51.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.2e-78 295.8 289 51.9
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.2e-78 295.8 289 51.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.2e-78 295.8 282 51.4
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 8.9e-78 295.0 307 49.2
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.2e-77 294.7 306 50.0
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.2e-77 294.7 321 46.1
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.2e-77 294.7 289 51.9
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.2e-77 294.7 293 50.2
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.2e-77 294.7 322 48.1
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.2e-77 294.7 308 50.3
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.2e-77 294.7 313 48.9
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.5e-77 294.3 298 50.0
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-77 294.3 289 51.2
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-77 294.3 289 51.2
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 2.0e-77 293.9 322 47.2
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.6e-77 293.5 322 47.2
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-77 293.5 289 51.2
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 4.4e-77 292.7 322 47.8
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 4.4e-77 292.7 324 47.2
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 5.8e-77 292.4 289 50.9
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.5e-77 292.0 319 47.3
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 7.5e-77 292.0 302 48.7
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 9.8e-77 291.6 320 46.2
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.3e-76 291.2 281 53.0
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.3e-76 291.2 322 46.6
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.7e-76 290.8 310 48.7
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.2e-76 290.4 312 48.4
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.9e-76 290.0 319 47.3
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 2.9e-76 290.0 322 46.0
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 2.9e-76 290.0 320 46.2
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 3.7e-76 289.7 293 50.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 6.4e-76 288.9 307 48.9
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 1.1e-75 288.1 300 49.0
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 2.4e-75 287.0 315 46.7
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 3.2e-75 286.6 295 48.5
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 3.2e-75 286.6 317 46.4
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 4.1e-75 286.2 325 46.5
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 5.4e-75 285.8 320 45.0
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.2e-74 284.6 322 45.3
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-74 284.3 289 50.5
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 1.6e-74 284.3 317 46.1
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 2.7e-74 283.5 319 45.5
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 4.6e-74 282.7 282 50.0
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.6e-74 282.7 321 45.2
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 6.0e-74 282.3 298 47.7
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 7.8e-74 282.0 322 44.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.0e-73 281.6 321 45.2
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.0e-73 280.0 295 48.1
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.1e-72 278.1 316 45.9
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.5e-72 277.7 320 44.4
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.9e-72 277.3 308 46.1
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.3e-72 276.2 262 52.7
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.6e-71 274.2 273 53.1
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 8.1e-71 271.9 321 44.5
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.1e-70 271.6 331 42.9
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 5.2e-70 269.2 282 47.9
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 8.9e-70 268.5 308 44.5
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 1.7e-68 264.2 244 51.6
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 5.4e-67 259.2 302 45.0
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 9.2e-67 258.5 368 39.1
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 7.8e-66 255.4 291 44.3
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 1.0e-65 255.0 322 43.8
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-64 251.5 239 49.4
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-63 247.7 233 51.9
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.2e-61 241.5 313 39.9
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 9.9e-61 238.4 207 56.5
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 3.8e-60 236.5 304 41.8
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 6.6e-57 225.7 322 40.4
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.4e-53 213.0 319 38.9
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 3.8e-52 209.9 322 39.1
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 2.4e-51 207.2 250 43.2
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.1e-50 204.1 239 42.7
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 6.0e-50 202.6 144 61.8
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.1e-48 198.4 320 38.4
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 1.5e-45 188.0 149 57.0
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 4.5e-45 186.4 176 47.7
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.6e-29 134.0 124 49.2
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.1e-25 119.8 99 53.5
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 8.7e-25 119.0 118 51.7
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.4e-24 115.9 97 61.9
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 2.4e-22 110.9 295 30.8
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 5.3e-22 109.8 179 35.2
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.0e-20 105.5 146 41.8
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.4e-19 101.7 285 29.8
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 4.6e-18 96.7 333 26.1
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 4.6e-18 96.7 259 29.3
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.1e-16 92.0 50 78.0
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.5e-13 80.1 59 55.9
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.0e-12 79.0 127 37.0
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 2.2e-12 77.8 60 58.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 2.5e-11 74.3 287 25.1
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 3.2e-11 73.9 304 26.6
AL3G14120 Arabidopsis lyrata HOM05D000398 ORTHO05D079346 1.8e-09 68.2 49 69.4
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 2.0e-08 64.7 296 26.4
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 5.7e-08 63.2 94 31.9
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 3.1e-06 57.4 293 25.6
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 5.3e-06 56.6 54 46.3
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 7.0e-06 56.2 231 25.1


User provided reference genes

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