Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47742 Brassica carinata HOM05D006437 ORTHO05D007973 1.1e-36 156.0 73 100.0
A06p26360 Brassica napus HOM05D006437 ORTHO05D007973 1.1e-36 156.0 73 100.0
BNapus_Darmor_BZH_scaffold_162p00120 Brassica napus HOM05D006437 ORTHO05D007973 1.1e-36 156.0 73 100.0
BNapus_Darmor_BZH_scaffold_78p00110 Brassica napus HOM05D006437 ORTHO05D007973 1.1e-36 156.0 73 100.0
BolC1t05835H Brassica oleracea HOM05D006437 ORTHO05D007973 1.1e-36 156.0 73 100.0
AL3G12980 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 3.2e-36 154.5 73 97.3
AT3G03341 Arabidopsis thaliana HOM05D006437 ORTHO05D007973 3.2e-36 154.5 73 97.3
Carub.0003s0252 Capsella rubella HOM05D006437 ORTHO05D007973 3.2e-36 154.5 73 97.3
CARHR077390 Cardamine hirsuta HOM05D006437 ORTHO05D007973 3.2e-36 154.5 73 97.3
Sp3g02370 Schrenkiella parvula HOM05D006437 ORTHO05D007973 4.2e-36 154.1 73 97.3
Thhalv10022211m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 7.2e-36 153.3 73 95.9
BraA01t04584Z Brassica rapa HOM05D006437 ORTHO05D007973 1.6e-35 152.1 73 98.6
BcaC09g47741 Brassica carinata HOM05D006437 ORTHO05D007973 2.1e-35 151.8 73 97.3
BcaC05g30279 Brassica carinata HOM05D006437 ORTHO05D007973 4.7e-35 150.6 73 95.9
AL288U10020 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.2e-33 146.0 73 94.5
Aa31LG5G13890 Aethionema arabicum HOM05D006437 ORTHO05D007973 4.8e-32 140.6 73 87.7
Carub.0006s1569 Capsella rubella HOM05D006437 ORTHO05D007973 2.0e-30 135.2 71 85.9
Medtr3g067715 Medicago truncatula HOM05D006437 ORTHO05D007973 2.7e-30 134.8 72 86.1
TPR.G15845 Trifolium pratense HOM05D006437 ORTHO05D007973 3.5e-30 134.4 72 84.7
Medtr3g067720 Medicago truncatula HOM05D006437 ORTHO05D007973 4.5e-30 134.0 72 83.3
Aqoxy7G00638 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 1.0e-29 132.9 71 84.5
BcaC04g18789 Brassica carinata HOM05D006437 ORTHO05D007973 1.3e-29 132.5 71 85.9
AL6G28540 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.7e-29 132.1 73 80.8
CANSAT78G0649 Cannabis sativa HOM05D006437 ORTHO05D007973 1.9e-28 128.6 72 80.6
ECA238G0319 Erigeron canadensis HOM05D006437 ORTHO05D007973 3.2e-28 127.9 71 80.3
Migut.L00468 Erythranthe guttata HOM05D006437 ORTHO05D007973 4.2e-28 127.5 72 80.6
Solyc02g091390.3 Solanum lycopersicum HOM05D006437 ORTHO05D007973 4.2e-28 127.5 72 76.4
Sopen02g036010 Solanum pennellii HOM05D006437 ORTHO05D007973 4.2e-28 127.5 72 76.4
PGSC0003DMG400030646 Solanum tuberosum HOM05D006437 ORTHO05D007973 4.2e-28 127.5 72 76.4
CARHR195740 Cardamine hirsuta HOM05D006437 ORTHO05D007973 9.4e-28 126.3 71 80.3
PSO017G0604 Papaver somniferum HOM05D006437 ORTHO05D007973 9.4e-28 126.3 72 75.0
PSO478G4394 Papaver somniferum HOM05D006437 ORTHO05D007973 9.4e-28 126.3 72 75.0
Zm00001eb158640 Zea mays HOM05D006437 ORTHO05D007973 9.4e-28 126.3 72 75.0
Cc07_g08170 Coffea canephora HOM05D006437 ORTHO05D007973 1.2e-27 125.9 72 79.2
DCAR_015248 Daucus carota HOM05D006437 ORTHO05D007973 1.2e-27 125.9 70 82.9
Nitab4.5_0004399g0060 Nicotiana tabacum HOM05D006437 ORTHO05D007973 1.2e-27 125.9 72 75.0
TAR629G2663 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.2e-27 125.9 72 79.2
Thhalv10015148m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 1.6e-27 125.6 73 78.1
Aqoxy5G01129 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.1e-27 125.2 72 75.0
Ca_08164_v3 Cicer arietinum L. HOM05D006437 ORTHO05D007973 2.1e-27 125.2 73 76.7
MD09G1261500 Malus domestica HOM05D006437 ORTHO05D007973 2.7e-27 124.8 72 77.8
A10p21920 Brassica napus HOM05D006437 ORTHO05D007973 3.6e-27 124.4 67 85.1
Phvul.001G231901 Phaseolus vulgaris HOM05D006437 ORTHO05D007973 3.6e-27 124.4 72 76.4
HanXRQChr07g0193741 Helianthus annuus HOM05D006437 ORTHO05D007973 4.7e-27 124.0 72 76.4
C09p59670 Brassica napus HOM05D006437 ORTHO05D007973 6.1e-27 123.6 66 86.4
BolC9t58806H Brassica oleracea HOM05D006437 ORTHO05D007973 6.1e-27 123.6 66 86.4
BraA10t44251Z Brassica rapa HOM05D006437 ORTHO05D007973 6.1e-27 123.6 66 86.4
Hma1.2p1_0832F.1_g225650 Hydrangea macrophylla HOM05D006437 ORTHO05D007973 6.1e-27 123.6 71 74.6
Lsat_1_v5_gn_2_81461 Lactuca sativa HOM05D006437 ORTHO05D007973 6.1e-27 123.6 71 74.6
Os01g0644200 Oryza sativa ssp. japonica HOM05D006437 ORTHO05D007973 6.1e-27 123.6 72 72.2
TAR371G0259 Trochodendron aralioides HOM05D006437 ORTHO05D007973 6.1e-27 123.6 72 76.4
TAR371G1269 Trochodendron aralioides HOM05D006437 ORTHO05D007973 6.1e-27 123.6 72 76.4
Glyma.11G218400 Glycine max HOM05D006437 ORTHO05D007973 8.0e-27 123.2 72 75.0
THA.LOC104820840 Tarenaya hassleriana HOM05D006437 ORTHO05D007973 8.0e-27 123.2 73 76.7
Glyma.18G038851 Glycine max HOM05D006437 ORTHO05D007973 1.0e-26 122.9 72 75.0
Lj6g0018768 Lotus japonicus HOM05D006437 ORTHO05D007973 1.0e-26 122.9 72 76.4
CiPaw.03G068600 Carya illinoinensis HOM05D006437 ORTHO05D007973 1.4e-26 122.5 72 77.8
FAN27G3274 Fragaria x ananassa HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 82.6
RcHm_v2.0_Chr1g0370661 Rosa chinensis HOM05D006437 ORTHO05D007973 1.4e-26 122.5 69 78.3
Eucgr.F02822 Eucalyptus grandis HOM05D006437 ORTHO05D007973 1.8e-26 122.1 72 77.8
SalBow7G1639 Salvia bowleyana HOM05D006437 ORTHO05D007973 1.8e-26 122.1 72 76.4
Ciclev10013249m.g Citrus clementina HOM05D006437 ORTHO05D007973 2.3e-26 121.7 72 75.0
Nn4g24140 Nelumbo nucifera HOM05D006437 ORTHO05D007973 4.0e-26 120.9 72 73.6
Sed0002962 Sechium edule HOM05D006437 ORTHO05D007973 4.0e-26 120.9 72 72.2
Cpa.g.sc604.3 Carica papaya HOM05D006437 ORTHO05D007973 6.8e-26 120.2 72 72.2
Cfa007843 Carpinus fangiana HOM05D006437 ORTHO05D007973 6.8e-26 120.2 71 76.1
Haze_14223 Corylus avellana HOM05D006437 ORTHO05D007973 6.8e-26 120.2 71 74.6
Nn3g18216 Nelumbo nucifera HOM05D006437 ORTHO05D007973 6.8e-26 120.2 72 73.6
MELO3C020290.2 Cucumis melo HOM05D006437 ORTHO05D007973 8.8e-26 119.8 72 73.6
Dinv19010 Davidia involucrata HOM05D006437 ORTHO05D007973 8.8e-26 119.8 71 77.5
Manes.02G074600 Manihot esculenta HOM05D006437 ORTHO05D007973 8.8e-26 119.8 72 70.8
AUR62023192 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.2e-25 119.4 71 70.4
FAN15G1984 Fragaria x ananassa HOM05D006437 ORTHO05D007973 1.2e-25 119.4 69 79.7
Lalb_Chr10g0104491 Lupinus albus HOM05D006437 ORTHO05D007973 1.5e-25 119.0 72 75.0
Potri.017G128600 Populus trichocarpa HOM05D006437 ORTHO05D007973 1.5e-25 119.0 71 73.2
GSVIVG01030860001 Vitis vinifera HOM05D006437 ORTHO05D007973 1.5e-25 119.0 72 73.6
EL10Ac2g04484 Beta vulgaris HOM05D006437 ORTHO05D007973 2.0e-25 118.6 72 72.2
AUR62023238 Chenopodium quinoa HOM05D006437 ORTHO05D007973 2.0e-25 118.6 72 70.8
Thecc.04G121100 Theobroma cacao HOM05D006437 ORTHO05D007973 2.0e-25 118.6 72 73.6
AUR62023239 Chenopodium quinoa HOM05D006437 ORTHO05D007973 2.6e-25 118.2 71 69.0
ClCG05G010950 Citrullus lanatus HOM05D006437 ORTHO05D007973 2.6e-25 118.2 72 70.8
CSS0043713 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 3.4e-25 117.9 69 75.4
CSS0019264 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 4.4e-25 117.5 72 72.2
PGR042G3666 Punica granatum HOM05D006437 ORTHO05D007973 4.4e-25 117.5 72 73.6
AUR62023191 Chenopodium quinoa HOM05D006437 ORTHO05D007973 7.5e-25 116.7 72 69.4
FvH4_5g32381 Fragaria vesca HOM05D006437 ORTHO05D007973 9.8e-25 116.3 66 81.8
Lalb_Chr10g0104501 Lupinus albus HOM05D006437 ORTHO05D007973 9.8e-25 116.3 73 71.2
QL11p004106 Quercus lobata HOM05D006437 ORTHO05D007973 2.8e-24 114.8 71 70.4
PSO017G3771 Papaver somniferum HOM05D006437 ORTHO05D007973 4.9e-24 114.0 69 73.9
PSO478G0303 Papaver somniferum HOM05D006437 ORTHO05D007973 4.9e-24 114.0 69 73.9
Mapoly0046s0059 Marchantia polymorpha HOM05D006437 ORTHO05D007973 1.1e-23 112.8 72 66.7
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.8e-23 112.1 62 79.0
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 4.1e-23 110.9 58 82.8
Prupe.3G158900 Prunus persica HOM05D006437 ORTHO05D007973 1.2e-22 109.4 61 75.4
Pp3c24_9690 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.0e-22 108.6 72 63.9
SMO111G0099 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 2.7e-22 108.2 72 66.7
CsaV3_1G027840 Cucumis sativus L. HOM05D006437 ORTHO05D007973 5.9e-22 107.1 65 67.7
CsaV3_3G021640 Cucumis sativus L. HOM05D006437 ORTHO05D007973 5.9e-22 107.1 65 67.7
Aqoxy7G00636 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 1.7e-21 105.5 61 77.0
Mapoly0046s0058 Marchantia polymorpha HOM05D006437 ORTHO05D007973 2.3e-21 105.1 72 65.3
Pp3c23_9530 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.9e-21 104.8 72 63.9
Pp3c19_5460 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.8e-21 104.4 72 63.9
Pp3c19_5500 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.8e-21 104.4 72 63.9
Pp3c8_12730 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.8e-21 104.4 72 61.1
Pp3c8_12731 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.8e-21 104.4 72 61.1
Pp3c21_13210 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.6e-21 103.2 72 62.5
Pp3c19_9840 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.9e-20 102.1 72 61.1
SMO111G0160 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.9e-20 102.1 72 63.9
SMO111G0173 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.9e-20 102.1 72 63.9
SMO293G0011 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.9e-20 102.1 72 63.9
MELO3C020291.2 Cucumis melo HOM05D006437 ORTHO05D007973 2.5e-20 101.7 72 63.9
Peaxi162Scf00118g00018 Petunia axillaris HOM05D006437 ORTHO05D007973 4.2e-20 100.9 64 71.9
Pp3c4_12160 Physcomitrium patens HOM05D006437 ORTHO05D007973 9.5e-20 99.8 72 56.9
SMO111G0149 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.6e-19 99.0 72 61.1
SEGI_27045 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 1.6e-19 99.0 69 59.4
SEGI_20637 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 6.1e-19 97.1 69 58.0
Mapoly0009s0147 Marchantia polymorpha HOM05D006437 ORTHO05D007973 1.2e-17 92.8 70 54.3
TAR371G0835 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.5e-17 90.1 49 79.6
Rhsim08G0086000 Rhododendron simsii HOM05D006437 ORTHO05D007973 9.8e-17 89.7 61 63.9
TAR371G0317 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.4e-15 85.1 48 77.1
SEGI_23307 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 9.2e-15 83.2 58 65.5
Cre03.g207152 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.7e-08 62.4 70 44.3
Cre13.g575701 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.6e-06 55.8 70 35.7
TAR371G0913 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.7e-06 55.1 69 42.0
Cre03.g207100 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 7.8e-06 53.5 71 35.2


User provided reference genes

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