Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 5.6e-222 774.2 472 100.0
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 5.2e-220 767.7 472 99.6
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 5.3e-196 688.0 473 89.9
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 1.2e-192 676.8 474 88.8
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 6.5e-146 521.5 487 67.1
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 1.5e-129 467.2 490 61.6
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 6.8e-127 458.4 549 56.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.8e-111 407.1 520 55.4
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.6e-107 394.0 481 54.5
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-106 391.0 491 59.1
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 3.9e-106 389.4 503 52.7
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.1e-100 371.3 496 52.8
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.1e-100 371.3 526 52.5
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.1e-100 371.3 526 52.5
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 1.4e-100 370.9 496 52.8
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 8.1e-96 355.1 647 43.7
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.1e-95 354.8 513 50.3
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 2.2e-93 347.1 576 45.7
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 1.4e-92 344.4 644 41.9
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 5.4e-92 342.4 532 48.5
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.5e-89 333.6 572 44.9
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 3.9e-82 309.7 596 43.1
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 5.9e-54 216.1 606 33.8
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.0e-50 203.8 506 35.0
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.4e-47 194.9 477 36.1
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 5.3e-47 193.0 513 35.5
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.7e-43 180.6 149 65.1
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 8.2e-40 169.1 485 34.4
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 7.0e-39 166.0 466 35.6
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 3.2e-36 157.1 520 32.9
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.6e-35 154.8 489 33.5
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 2.1e-35 154.5 472 32.6
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 3.6e-35 153.7 475 32.4
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.0e-34 150.6 491 31.4
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 3.9e-34 150.2 116 70.7
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.0e-33 147.9 473 30.2
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.3e-33 147.1 485 32.6
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 4.4e-33 146.7 496 30.4
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.7e-32 144.8 519 30.1
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.1e-31 140.2 477 33.8
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 3.5e-30 137.1 491 36.5
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 4.5e-30 136.7 478 31.2
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-29 135.2 273 38.5
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-29 135.2 480 35.6
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.3e-29 135.2 473 31.7
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.3e-29 135.2 473 31.7
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.2e-29 134.4 451 31.7
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 3.8e-29 133.7 253 40.7
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 5.0e-29 133.3 508 30.1
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 5.0e-29 133.3 217 37.8
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 8.5e-29 132.5 480 32.3
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.1e-28 132.1 483 30.4
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.5e-28 131.7 471 37.6
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.5e-28 131.7 491 32.0
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.2e-28 130.2 473 29.0
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 9.4e-28 129.0 474 30.6
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.2e-27 128.6 531 31.8
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.6e-27 128.3 478 41.0
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.6e-27 128.3 492 31.3
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.1e-27 127.9 136 47.1
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.7e-27 127.5 473 29.8
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.7e-27 127.5 470 36.4
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.0e-26 125.6 463 28.1
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.4e-26 125.2 473 33.4
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 1.8e-26 124.8 164 48.8
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 2.3e-26 124.4 513 29.4
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.3e-26 124.4 509 30.6
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.3e-26 124.4 468 34.0
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 3.0e-26 124.0 482 33.0
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 3.0e-26 124.0 470 37.9
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.0e-26 124.0 480 30.2
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 4.0e-26 123.6 485 38.8
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 5.2e-26 123.2 466 40.3
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.6e-25 120.9 486 36.0
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 4.4e-25 120.2 478 30.8
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 5.7e-25 119.8 472 31.1
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.3e-24 118.6 224 41.1
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 2.8e-24 117.5 473 29.8
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 2.8e-24 117.5 470 28.7
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 4.8e-24 116.7 480 28.5
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 4.8e-24 116.7 209 41.6
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 4.8e-24 116.7 220 40.5
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 8.3e-24 115.9 233 37.8
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 8.3e-24 115.9 208 39.9
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.8e-23 114.8 496 29.4
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.8e-23 114.8 472 28.6
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 2.4e-23 114.4 529 34.8
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 3.1e-23 114.0 190 42.6
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 4.1e-23 113.6 474 29.3
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 4.1e-23 113.6 473 28.1
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.2e-22 112.1 123 46.3
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.2e-22 112.1 153 42.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 2.0e-22 111.3 158 43.0
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.7e-22 110.9 484 28.1
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.7e-22 110.9 176 39.8
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 3.5e-22 110.5 462 28.4
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 3.5e-22 110.5 477 37.5
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 5.9e-22 109.8 485 29.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 5.9e-22 109.8 487 27.5
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.0e-21 109.0 469 27.7
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.2e-21 107.8 499 30.3
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.9e-21 107.5 170 41.8
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 6.5e-21 106.3 497 30.8
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 6.5e-21 106.3 484 27.9
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 8.5e-21 105.9 486 28.4
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 8.5e-21 105.9 154 44.8
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 3.2e-20 104.0 197 38.6
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 4.2e-20 103.6 213 39.0
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 7.2e-20 102.8 473 28.3
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 7.2e-20 102.8 473 28.3
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.2e-19 102.1 496 27.2
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.7e-19 100.9 495 27.1
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 6.1e-19 99.8 581 25.6
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 6.1e-19 99.8 489 28.4
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 8.0e-19 99.4 519 27.2
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.4e-18 98.6 467 28.5
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 1.4e-18 98.6 515 32.6
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.4e-18 98.6 129 41.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 3.0e-18 97.4 482 26.8
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.0e-18 97.4 484 27.5
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.2e-17 95.5 469 27.9
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.0e-17 94.7 132 41.7
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.0e-17 94.7 484 26.7
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 4.4e-17 93.6 216 36.1
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 4.4e-17 93.6 482 28.4
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 4.4e-17 93.6 503 24.7
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 5.7e-17 93.2 530 32.3
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 7.5e-17 92.8 215 35.8
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 4.8e-16 90.1 333 30.3
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 8.3e-16 89.4 603 29.4
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 7.0e-15 86.3 351 29.1
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 4.5e-14 83.6 67 71.6
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 7.7e-14 82.8 217 36.9
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.7e-13 81.6 502 25.1
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.7e-13 81.6 98 44.9
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 2.3e-13 81.3 155 34.2
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.1e-12 79.0 157 35.7
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.9e-12 78.2 113 39.8
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 5.5e-12 76.6 561 28.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.1e-11 74.7 363 28.9
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.5e-09 68.6 49 59.2
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.4e-09 67.4 70 50.0
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.4e-09 67.4 496 23.4
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 5.7e-09 66.6 97 40.2
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.2e-08 64.7 41 68.3
SGA_v2.0_scaffold10G05111 Striga asiatica HOM05D004938 ORTHO05D006035 2.8e-08 64.3 154 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 4.9e-08 63.5 131 35.9
BcaB07g33758 Brassica carinata HOM05D010442 ORTHO05D010690 1.4e-07 62.0 211 34.6
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 1.8e-07 61.6 108 35.2
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 3.2e-07 60.8 153 31.4
A10p20400 Brassica napus HOM05D004938 ORTHO05D006035 4.1e-07 60.5 149 33.6
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 4.1e-07 60.5 152 32.2
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 5.4e-07 60.1 147 32.0
Thhalv10013082m.g Eutrema salsugineum HOM05D004938 ORTHO05D006035 9.2e-07 59.3 149 34.2
TWI73G0197 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 9.2e-07 59.3 152 30.9
TPR.G38053 Trifolium pratense HOM05D004938 ORTHO05D006035 1.2e-06 58.9 152 32.2
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 1.6e-06 58.5 152 33.6
BraA10t44110Z Brassica rapa HOM05D004938 ORTHO05D006035 1.6e-06 58.5 149 32.9
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.6e-06 58.5 148 31.8
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.6e-06 58.5 148 31.8
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 2.0e-06 58.2 150 32.7
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 2.0e-06 58.2 152 31.6
AL6G30760 Arabidopsis lyrata HOM05D004938 ORTHO05D006035 2.7e-06 57.8 149 32.2
AT5G19280 Arabidopsis thaliana HOM05D004938 ORTHO05D006035 2.7e-06 57.8 149 32.9
BcaC04g18583 Brassica carinata HOM05D004938 ORTHO05D006035 2.7e-06 57.8 149 32.9
C09p57000 Brassica napus HOM05D004938 ORTHO05D006035 2.7e-06 57.8 149 32.9
BolC9t58564H Brassica oleracea HOM05D004938 ORTHO05D006035 2.7e-06 57.8 149 32.9
Sp6g25140 Schrenkiella parvula HOM05D004938 ORTHO05D006035 2.7e-06 57.8 147 32.7
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 3.5e-06 57.4 154 33.8
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 3.5e-06 57.4 147 32.7
AagrBONN_evm.TU.Sc2ySwM_368.1070 Anthoceros agrestis HOM05D004938 ORTHO05D006035 4.5e-06 57.0 161 30.4
arahy.Tifrunner.gnm1.ann1.AAS7XX Arachis hypogaea HOM05D004938 ORTHO05D006035 4.5e-06 57.0 113 37.2
arahy.Tifrunner.gnm1.ann1.CBXD69 Arachis hypogaea HOM05D004938 ORTHO05D006035 4.5e-06 57.0 113 37.2
Eucgr.H03562 Eucalyptus grandis HOM05D004938 ORTHO05D006035 4.5e-06 57.0 147 31.3
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 4.5e-06 57.0 145 31.0
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 4.5e-06 57.0 129 31.8
BcaB08g36589 Brassica carinata HOM05D004938 ORTHO05D006035 5.9e-06 56.6 149 32.9
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 5.9e-06 56.6 99 37.4
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 7.8e-06 56.2 145 31.0
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 7.8e-06 56.2 145 30.3
Medtr5g005810 Medicago truncatula HOM05D004938 ORTHO05D006035 7.8e-06 56.2 152 30.9
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 7.8e-06 56.2 55 49.1


User provided reference genes

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