Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 4.3e-110 401.4 206 100.0
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 5.6e-110 401.0 205 100.0
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 5.6e-110 401.0 205 100.0
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 2.0e-107 392.5 205 98.0
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 2.0e-107 392.5 205 97.6
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 1.9e-102 375.9 205 94.1
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 6.4e-90 334.3 205 82.9
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 3.5e-88 328.6 205 81.5
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.8e-87 326.2 205 81.5
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.1e-86 323.6 205 79.0
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 2.3e-79 299.3 205 76.1
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.0e-71 273.9 205 70.7
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.3e-71 273.5 226 65.0
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 2.9e-50 202.6 204 53.9
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 3.2e-49 199.1 203 52.7
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.2e-48 197.2 203 51.7
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.1e-48 196.4 204 53.9
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 2.7e-48 196.1 204 51.5
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 4.7e-48 195.3 204 51.0
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 1.4e-47 193.7 204 52.5
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.4e-47 193.7 204 52.5
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.4e-47 193.7 204 52.5
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 1.4e-47 193.7 203 52.2
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 2.3e-47 193.0 202 51.5
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.0e-47 192.6 204 52.0
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 5.2e-47 191.8 203 50.7
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 1.2e-46 190.7 203 52.7
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 1.2e-46 190.7 202 51.5
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.2e-46 190.7 204 52.0
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 2.6e-46 189.5 203 51.7
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 3.3e-46 189.1 203 51.2
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 4.4e-46 188.7 203 52.2
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 5.7e-46 188.3 203 52.2
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 5.7e-46 188.3 203 49.8
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 1.3e-45 187.2 205 51.2
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 2.8e-45 186.0 203 48.3
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 2.8e-45 186.0 203 49.3
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.8e-45 185.3 199 50.8
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 4.8e-45 185.3 203 48.8
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 6.3e-45 184.9 204 49.5
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.4e-44 183.7 205 49.3
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.4e-44 183.7 204 50.0
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 1.8e-44 183.3 203 50.7
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 2.4e-44 183.0 205 47.3
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 2.4e-44 183.0 203 49.3
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 2.4e-44 183.0 199 50.3
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 3.1e-44 182.6 203 48.8
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 3.1e-44 182.6 203 48.8
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 3.1e-44 182.6 205 50.2
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 3.1e-44 182.6 203 48.3
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 4.1e-44 182.2 202 49.0
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 4.1e-44 182.2 203 50.2
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 7.0e-44 181.4 204 49.5
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 7.0e-44 181.4 204 49.5
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 7.0e-44 181.4 203 48.8
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 1.2e-43 180.6 203 48.3
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.6e-43 180.3 203 48.8
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 2.0e-43 179.9 203 49.3
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 2.0e-43 179.9 204 50.5
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 2.0e-43 179.9 205 47.3
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 2.7e-43 179.5 203 48.3
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.7e-43 179.5 205 49.3
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 3.5e-43 179.1 205 47.8
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 3.5e-43 179.1 205 47.8
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 3.5e-43 179.1 203 48.8
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 4.5e-43 178.7 203 48.3
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 4.5e-43 178.7 203 48.3
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 5.9e-43 178.3 204 47.1
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 7.7e-43 177.9 204 48.5
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 1.0e-42 177.6 203 49.8
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 1.3e-42 177.2 204 48.0
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.7e-42 176.8 205 47.8
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 1.7e-42 176.8 203 46.8
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 1.7e-42 176.8 203 49.3
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 2.2e-42 176.4 203 50.2
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.2e-42 176.4 203 48.3
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.9e-42 176.0 204 47.1
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 2.9e-42 176.0 205 47.3
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 2.9e-42 176.0 205 47.8
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 2.9e-42 176.0 202 46.5
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 3.8e-42 175.6 203 48.3
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 3.8e-42 175.6 203 47.8
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 5.0e-42 175.3 205 47.3
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 5.0e-42 175.3 203 46.3
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 5.0e-42 175.3 203 47.3
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 8.5e-42 174.5 205 46.8
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 8.5e-42 174.5 205 46.8
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 8.5e-42 174.5 205 46.8
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 3.2e-41 172.6 203 46.8
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 3.2e-41 172.6 196 49.0
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 9.4e-41 171.0 203 49.3
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.2e-40 170.6 204 47.1
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 2.1e-40 169.9 202 47.5
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 2.7e-40 169.5 204 48.5
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 4.7e-40 168.7 203 46.3
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 3.0e-39 166.0 204 45.6
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 5.2e-39 165.2 203 45.8
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 8.8e-39 164.5 235 41.3
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 1.2e-38 164.1 199 49.2
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.5e-38 163.7 204 45.1
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 2.0e-38 163.3 203 45.3
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 4.4e-38 162.2 203 44.3
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 2.2e-37 159.8 205 44.4
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 7.7e-35 151.4 199 43.2
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.7e-34 150.2 207 41.1
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 5.0e-34 148.7 203 45.3
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 2.5e-33 146.4 160 51.2
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.2e-33 145.6 204 45.1
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 7.2e-33 144.8 204 42.2
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 9.5e-33 144.4 142 53.5
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 1.2e-32 144.1 199 42.7
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 2.1e-32 143.3 199 42.7
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.0e-31 141.0 203 40.4
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 3.0e-31 139.4 203 41.4
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.2e-30 137.5 162 46.9
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 2.8e-29 132.9 203 42.4
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 4.9e-29 132.1 142 50.0
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 1.8e-28 130.2 203 41.9
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 5.9e-27 125.2 204 39.7
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.0e-26 124.4 110 56.4
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 1.3e-26 124.0 199 41.2
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 5.0e-26 122.1 170 42.9
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 8.9e-23 111.3 203 36.9
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 3.7e-21 105.9 202 33.2
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 5.4e-20 102.1 71 67.6
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 3.5e-19 99.4 208 33.2
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.9e-17 93.6 202 33.2
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 2.8e-16 89.7 169 33.1
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.8e-15 87.0 109 40.4
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 7.3e-09 65.1 249 27.7
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.6e-08 63.9 43 69.8
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 1.8e-07 60.5 86 40.7
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 8.9e-07 58.2 38 73.7


User provided reference genes

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