Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 6.1e-109 397.5 204 100.0
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 2.1e-85 319.3 231 77.9
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 2.4e-81 305.8 232 74.1
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 1.2e-80 303.5 232 74.6
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 1.6e-80 303.1 236 73.3
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 3.5e-80 302.0 229 73.8
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 8.6e-79 297.4 232 73.3
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 4.6e-72 275.0 232 71.1
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 4.6e-72 275.0 232 71.1
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 1.5e-67 260.0 238 66.4
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 2.4e-65 252.7 232 65.9
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 7.1e-65 251.1 237 65.4
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 1.2e-64 250.4 237 65.0
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 2.7e-64 249.2 238 63.4
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 1.1e-62 243.8 227 65.2
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 1.9e-62 243.0 229 63.3
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 5.3e-60 235.0 228 60.1
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 2.7e-56 222.6 208 64.4
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 2.5e-54 216.1 231 58.0
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 2.2e-50 203.0 208 61.5
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 3.2e-49 199.1 230 56.5
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 3.9e-47 192.2 222 55.4
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 3.0e-39 166.0 235 51.1
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 2.1e-24 116.7 213 38.0
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 2.1e-24 116.7 221 39.4
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 4.1e-20 102.4 222 36.9
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 9.1e-20 101.3 220 36.8
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 1.0e-18 97.8 214 36.9
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.0e-18 97.8 226 38.9
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 2.2e-18 96.7 219 35.2
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 1.1e-17 94.4 223 35.9
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 1.9e-17 93.6 227 35.7
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.9e-17 93.6 198 38.9
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 1.9e-17 93.6 223 35.4
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 4.2e-17 92.4 209 39.2
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 5.5e-17 92.0 214 37.9
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 5.5e-17 92.0 233 35.2
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 1.2e-16 90.9 220 34.5
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 2.1e-16 90.1 216 37.0
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 2.7e-16 89.7 210 34.3
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 3.6e-16 89.4 228 36.8
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 4.7e-16 89.0 213 37.1
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 4.7e-16 89.0 216 36.6
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 4.7e-16 89.0 217 36.4
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 6.1e-16 88.6 216 36.6
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 1.4e-15 87.4 205 37.6
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 6.7e-15 85.1 216 33.8
AL1G34860 Arabidopsis lyrata HOM05D011160 ORTHO05D013203 2.0e-14 83.6 186 43.5
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 2.0e-14 83.6 198 36.4
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 5.7e-14 82.0 226 35.8
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 5.7e-14 82.0 214 33.6
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 7.5e-14 81.6 216 31.9
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 1.3e-13 80.9 221 33.9
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 1.7e-13 80.5 217 34.6
A01p18880 Brassica napus HOM05D007332 ORTHO05D009297 2.8e-13 79.7 48 85.4
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 3.7e-13 79.3 207 36.2
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 3.7e-13 79.3 206 36.9
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 1.1e-12 77.8 222 33.3
Thhalv10009307m.g Eutrema salsugineum HOM05D011160 ORTHO05D013203 1.4e-12 77.4 177 44.6
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 1.4e-12 77.4 216 32.4
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 1.8e-12 77.0 214 33.6
CARHR022050 Cardamine hirsuta HOM05D011160 ORTHO05D013203 2.4e-12 76.6 203 39.4
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 2.4e-12 76.6 202 32.2
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.4e-12 76.6 203 34.0
Carub.0001s2113 Capsella rubella HOM05D011160 ORTHO05D013203 3.1e-12 76.3 194 39.7
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 3.1e-12 76.3 236 34.3
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 7.0e-12 75.1 209 31.6
AT1G21695 Arabidopsis thaliana HOM05D011160 ORTHO05D013203 9.1e-12 74.7 209 39.2
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 1.6e-11 73.9 218 35.3
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 1.6e-11 73.9 214 32.2
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.0e-11 73.6 203 34.5
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 3.5e-11 72.8 221 31.7
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 3.5e-11 72.8 185 38.9
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 4.5e-11 72.4 240 33.3
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 4.5e-11 72.4 200 33.5
Sp1g19250 Schrenkiella parvula HOM05D011160 ORTHO05D013203 5.9e-11 72.0 200 35.5
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 7.7e-11 71.6 199 34.2
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 7.7e-11 71.6 203 34.0
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 1.0e-10 71.2 212 32.1
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 6.5e-10 68.6 203 33.5
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 6.5e-10 68.6 203 31.5
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 8.5e-10 68.2 197 33.5
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 8.5e-10 68.2 204 34.3
BcaB07g32166 Brassica carinata HOM05D011160 ORTHO05D013203 1.1e-09 67.8 203 36.5
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 9.4e-09 64.7 205 32.7
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 3.6e-08 62.8 200 33.5
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 4.7e-08 62.4 198 32.8
A06p17780 Brassica napus HOM05D011160 ORTHO05D013203 1.0e-07 61.2 184 35.3
BraA06t24870Z Brassica rapa HOM05D011160 ORTHO05D013203 1.0e-07 61.2 184 35.3
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 1.0e-07 61.2 204 31.9
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 1.4e-07 60.8 226 30.5
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 1.8e-07 60.5 202 31.2
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 6.8e-07 58.5 229 30.1
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 6.8e-07 58.5 197 34.0
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 2.0e-06 57.0 222 29.7


User provided reference genes

Program Settings