Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 1.6e-110 402.9 225 100.0
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 9.2e-82 307.4 221 83.7
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 6.6e-80 301.2 221 81.0
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 2.5e-79 299.3 221 81.9
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 6.2e-78 294.7 221 81.4
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 6.0e-73 278.1 220 80.9
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 3.8e-67 258.8 212 78.3
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 6.4e-67 258.1 213 74.2
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 8.4e-67 257.7 213 75.1
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 1.1e-66 257.3 212 75.0
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 1.1e-66 257.3 214 73.4
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 5.1e-64 248.4 202 74.8
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 9.6e-63 244.2 202 73.8
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 3.6e-62 242.3 219 72.6
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 8.1e-62 241.1 199 73.9
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 4.4e-60 235.3 221 68.8
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 9.9e-60 234.2 202 72.3
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 6.0e-41 171.8 215 57.2
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 2.1e-38 163.3 175 61.1
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 3.0e-32 142.9 214 44.4
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 1.9e-31 140.2 219 46.6
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 5.7e-31 138.7 174 47.1
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 2.2e-30 136.7 139 54.0
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 1.1e-29 134.4 170 47.1
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.4e-29 134.0 208 48.1
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 6.9e-29 131.7 182 45.1
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 2.0e-28 130.2 166 48.2
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 1.3e-27 127.5 163 49.7
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 1.7e-27 127.1 174 47.7
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 1.7e-27 127.1 178 46.1
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 2.2e-27 126.7 209 46.9
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 2.9e-27 126.3 210 40.0
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 3.8e-27 125.9 223 39.9
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 3.8e-27 125.9 206 43.7
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 5.0e-27 125.6 172 45.3
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 6.5e-27 125.2 210 47.1
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 6.5e-27 125.2 208 42.3
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 8.5e-27 124.8 152 55.9
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.1e-26 124.4 210 46.2
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.9e-26 123.6 215 45.1
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 2.5e-26 123.2 189 49.7
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.5e-26 123.2 195 43.1
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 3.2e-26 122.9 197 42.6
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 5.5e-26 122.1 179 45.3
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 9.4e-26 121.3 115 66.1
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 9.4e-26 121.3 198 44.4
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.2e-25 120.9 212 48.1
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 1.2e-25 120.9 223 43.0
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 2.7e-25 119.8 197 45.2
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 6.1e-25 118.6 170 39.4
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 7.9e-25 118.2 179 47.5
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 7.9e-25 118.2 122 55.7
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 7.9e-25 118.2 169 43.2
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 1.4e-24 117.5 102 63.7
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 1.4e-24 117.5 201 44.3
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 1.4e-24 117.5 193 47.7
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.4e-24 117.5 184 44.6
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 2.3e-24 116.7 200 43.0
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 3.0e-24 116.3 173 46.8
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 5.1e-24 115.5 205 43.4
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 6.7e-24 115.2 122 53.3
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 6.7e-24 115.2 170 38.2
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 6.7e-24 115.2 174 47.1
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.1e-23 114.4 179 44.7
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 1.1e-23 114.4 127 56.7
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 1.5e-23 114.0 199 45.7
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 1.5e-23 114.0 218 40.8
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 3.3e-23 112.8 178 45.5
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 3.3e-23 112.8 154 51.9
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 5.7e-23 112.1 123 52.0
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 5.7e-23 112.1 187 41.2
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 5.7e-23 112.1 210 41.9
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 7.4e-23 111.7 178 45.5
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 9.7e-23 111.3 155 45.2
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 3.7e-22 109.4 179 47.5
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 4.8e-22 109.0 110 55.5
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 4.8e-22 109.0 160 48.1
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 6.3e-22 108.6 110 67.3
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 6.3e-22 108.6 159 48.4
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 6.3e-22 108.6 214 40.2
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 8.2e-22 108.2 138 52.2
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 1.1e-21 107.8 207 37.2
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 1.1e-21 107.8 180 43.3
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 5.3e-21 105.5 170 47.6
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 1.2e-20 104.4 226 38.5
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 1.5e-20 104.0 170 47.1
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 5.9e-20 102.1 113 51.3
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 7.7e-20 101.7 180 36.1
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 1.7e-19 100.5 165 43.0
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 2.9e-19 99.8 195 45.6
AL5G28080 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 5.0e-19 99.0 99 70.7
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 1.4e-18 97.4 199 35.7
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 2.5e-18 96.7 73 64.4
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 4.2e-18 95.9 117 50.4
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 2.1e-17 93.6 118 59.3
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 3.6e-17 92.8 115 47.0
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 4.7e-17 92.4 118 59.3
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.4e-16 90.9 115 53.0
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 2.3e-16 90.1 230 37.8
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 3.0e-16 89.7 186 34.4
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 6.7e-16 88.6 127 51.2
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 8.8e-16 88.2 144 49.3
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 8.8e-16 88.2 175 41.7
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 1.8e-13 80.5 99 60.6
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 3.1e-13 79.7 161 40.4
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 5.3e-13 79.0 142 40.8
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 9.1e-13 78.2 213 31.9
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 4.5e-12 75.9 117 38.5
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 5.0e-11 72.4 152 40.8
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 2.5e-10 70.1 119 44.5
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 4.2e-10 69.3 194 37.1
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 2.7e-09 66.6 48 56.2
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 6.1e-09 65.5 151 33.1
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 2.3e-08 63.5 90 46.7
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 3.0e-08 63.2 48 60.4
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 5.2e-08 62.4 120 48.3
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 4.4e-07 59.3 43 65.1
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 7.5e-07 58.5 60 61.7


User provided reference genes

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