Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.3e-119 431.8 226 100.0
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.3e-119 431.8 226 100.0
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 5.9e-113 411.0 220 98.2
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 8.0e-110 400.6 226 95.1
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 4.0e-109 398.3 226 94.7
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 3.4e-108 395.2 227 93.8
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 7.1e-98 360.9 227 88.5
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 2.1e-97 359.4 227 88.5
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.3e-96 356.7 227 89.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 5.1e-96 354.8 227 88.1
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 5.1e-96 354.8 226 88.1
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 5.1e-96 354.8 227 88.1
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 4.0e-93 345.1 226 84.5
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.4e-90 336.7 226 83.2
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.7e-89 332.4 222 83.8
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 3.9e-88 328.6 226 82.7
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 6.6e-88 327.8 227 83.7
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.6e-81 306.6 229 76.4
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 5.3e-77 291.6 227 71.4
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.8e-69 266.5 185 81.6
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.3e-62 243.8 224 62.5
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 6.9e-61 238.0 217 63.1
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 9.0e-61 237.7 217 64.1
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.2e-60 237.3 216 63.9
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.2e-60 237.3 223 62.3
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.5e-60 236.9 209 64.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.0e-60 236.5 219 61.2
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 4.5e-60 235.3 203 65.5
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 5.8e-60 235.0 215 62.8
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.0e-59 234.2 229 60.7
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.3e-59 233.8 214 61.7
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.2e-59 233.0 215 63.7
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 3.8e-59 232.3 215 60.9
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 3.8e-59 232.3 225 61.3
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 6.5e-59 231.5 200 65.5
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.1e-58 230.7 221 60.6
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.1e-58 230.7 216 63.4
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.1e-58 230.7 222 61.3
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.9e-58 229.9 224 57.6
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 2.5e-58 229.6 204 62.7
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 3.2e-58 229.2 218 59.6
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.2e-58 229.2 225 59.1
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 7.1e-58 228.0 207 61.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 9.3e-58 227.6 223 61.4
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 9.3e-58 227.6 211 62.1
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 9.3e-58 227.6 222 60.8
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.2e-57 227.3 226 60.6
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 1.6e-57 226.9 223 61.4
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.6e-57 226.9 208 61.5
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.6e-57 226.9 209 62.7
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.0e-57 224.9 222 61.3
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 6.0e-57 224.9 202 64.4
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 7.9e-57 224.6 217 61.8
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 7.9e-57 224.6 217 61.3
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 7.9e-57 224.6 205 62.9
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 7.9e-57 224.6 216 60.2
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.0e-56 224.2 220 60.0
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.0e-56 224.2 209 62.2
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.3e-56 223.8 200 61.0
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.3e-56 223.0 219 61.2
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 3.0e-56 222.6 209 61.7
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.0e-56 222.6 211 61.1
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 3.9e-56 222.2 209 61.2
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 3.9e-56 222.2 227 57.3
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 6.7e-56 221.5 186 67.2
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.1e-55 220.7 209 62.7
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.1e-55 220.7 215 59.1
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 2.5e-55 219.5 201 60.2
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 4.3e-55 218.8 200 59.0
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 5.7e-55 218.4 224 56.2
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 7.4e-55 218.0 241 54.4
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 9.6e-55 217.6 209 61.2
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 9.6e-55 217.6 199 64.3
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.3e-54 217.2 184 65.8
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.3e-54 217.2 229 56.3
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.6e-54 216.9 201 61.2
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.1e-54 216.5 215 58.1
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.8e-54 216.1 207 60.9
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.8e-54 216.1 160 77.5
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 6.3e-54 214.9 202 61.4
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 6.3e-54 214.9 212 60.8
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 6.3e-54 214.9 210 56.7
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 8.2e-54 214.5 143 77.6
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.1e-53 214.2 203 58.6
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.1e-53 214.2 208 56.7
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.1e-53 214.2 199 58.3
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 6.9e-53 211.5 227 55.5
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 9.0e-53 211.1 201 60.7
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 9.0e-53 211.1 224 55.8
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 9.0e-53 211.1 192 62.5
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.2e-52 210.7 195 61.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.0e-52 209.9 231 56.3
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 2.0e-52 209.9 146 74.7
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.0e-52 209.9 182 63.7
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.6e-52 209.5 210 58.6
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 4.5e-52 208.8 199 57.3
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 1.0e-51 207.6 211 57.8
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.3e-51 207.2 201 60.2
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.3e-51 207.2 210 60.5
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 2.2e-51 206.5 158 70.3
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 3.8e-51 205.7 198 58.6
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.0e-51 205.3 184 64.7
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 5.0e-51 205.3 196 60.7
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 6.5e-51 204.9 155 71.0
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.9e-50 203.4 182 63.2
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 5.5e-50 201.8 212 57.5
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 7.2e-50 201.4 210 57.6
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 3.0e-48 196.1 142 73.9
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 6.7e-48 194.9 170 63.5
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.1e-47 194.1 188 62.2
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 4.3e-47 192.2 131 71.8
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 5.7e-47 191.8 177 62.1
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.3e-46 190.7 146 69.9
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 2.8e-46 189.5 198 61.1
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 6.3e-46 188.3 201 54.2
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 8.2e-46 188.0 201 54.2
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.8e-45 186.8 211 55.0
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 4.1e-45 185.7 214 57.5
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.5e-44 183.7 201 56.7
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.9e-44 181.8 142 67.6
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.4e-42 177.2 126 73.0
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.0e-40 171.0 133 66.9
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 2.3e-40 169.9 131 67.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.5e-39 166.4 137 65.0
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 9.7e-39 164.5 133 63.2
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.8e-38 162.9 137 64.2
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 9.1e-37 157.9 223 47.5
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.3e-32 143.3 126 60.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.3e-30 137.5 80 90.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.3e-30 137.5 80 90.0
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 9.1e-29 131.3 160 50.0
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 6.5e-27 125.2 217 42.4
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 5.5e-26 122.1 73 83.6
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 3.3e-23 112.8 218 39.9
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.0e-19 101.3 70 77.1
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.7e-14 84.0 72 62.5
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 8.3e-14 81.6 70 64.3
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 3.8e-11 72.8 137 40.1
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 6.5e-11 72.0 44 84.1
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.5e-10 68.9 45 77.8


User provided reference genes

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