Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1495.3 833 100.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1495.3 833 100.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 0.0e+00 1456.0 833 97.6
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1430.2 836 96.4
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 0.0e+00 1430.2 836 96.4
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1350.1 844 90.0
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 0.0e+00 1237.2 844 80.7
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 0.0e+00 1229.2 840 81.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 0.0e+00 1226.1 835 81.2
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 0.0e+00 1207.2 801 82.1
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1152.5 679 93.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 0.0e+00 1115.9 849 74.1
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.4e-308 1062.0 677 86.1
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.2e-288 996.5 605 89.8
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 6.1e-288 994.2 838 68.1
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 4.4e-262 908.3 835 61.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.5e-259 898.3 834 61.9
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 7.7e-259 897.5 831 60.8
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 3.8e-258 895.2 815 61.3
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 7.2e-257 891.0 835 61.8
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 8.0e-256 887.5 836 59.8
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-255 886.3 816 63.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.8e-255 886.3 836 59.7
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 6.8e-255 884.4 820 61.2
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 6.3e-253 877.9 816 61.5
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.1e-252 875.5 810 61.0
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.0e-252 874.4 836 59.0
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.2e-251 873.6 833 61.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 7.7e-251 870.9 825 59.4
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.0e-250 870.5 812 60.3
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.2e-250 869.4 814 60.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.9e-250 869.0 810 59.6
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 7.2e-249 864.4 840 60.1
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 2.8e-248 862.4 816 59.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 6.1e-248 861.3 816 59.9
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 8.0e-248 860.9 818 60.6
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.3e-247 859.4 813 59.4
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.3e-247 859.4 816 59.7
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 8.8e-247 857.4 816 58.5
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 2.8e-245 852.4 814 57.6
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 4.9e-245 851.7 812 59.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 6.3e-245 851.3 820 58.3
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.3e-245 850.9 824 58.9
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 4.1e-244 848.6 837 56.6
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 4.1e-244 848.6 837 56.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.0e-242 844.0 828 60.0
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 4.3e-241 838.6 819 57.8
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 9.5e-241 837.4 817 57.4
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 9.5e-241 837.4 817 57.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.2e-240 837.0 819 58.0
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.6e-240 836.6 819 58.7
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.6e-240 835.5 837 58.3
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 8.9e-239 830.9 832 56.6
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.4e-238 828.6 813 56.7
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 5.7e-238 828.2 817 57.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.7e-238 828.2 816 58.3
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 5.7e-238 828.2 808 56.9
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 9.8e-238 827.4 817 57.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.7e-237 825.5 840 58.6
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.7e-237 825.5 834 56.2
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.4e-237 824.7 840 59.9
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 8.3e-237 824.3 811 57.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 9.2e-236 820.8 819 56.8
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.9e-233 813.1 817 55.3
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.2e-232 810.4 830 58.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.6e-232 810.1 815 57.3
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.7e-232 808.5 823 57.8
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.7e-232 808.5 817 55.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.3e-231 806.2 834 55.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.3e-231 806.2 823 55.7
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 6.8e-231 804.7 812 55.4
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.7e-229 800.0 843 58.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 5.4e-228 795.0 817 56.5
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.0e-227 793.1 827 53.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.5e-225 786.2 812 56.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 3.6e-224 782.3 825 55.4
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 4.7e-224 781.9 844 52.8
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 6.2e-224 781.6 824 55.5
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.3e-223 779.6 825 53.3
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 8.9e-223 777.7 822 55.1
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 4.4e-222 775.4 819 53.7
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.2e-221 773.1 861 53.8
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 6.4e-221 771.5 816 56.1
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 6.0e-219 765.0 837 55.1
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 3.6e-216 755.7 859 53.3
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.9e-209 733.4 745 56.2
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 6.2e-208 728.4 819 52.5
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.1e-207 727.6 833 50.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.5e-206 723.8 849 51.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.6e-206 721.5 813 52.2
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.0e-202 709.5 912 47.5
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.9e-201 706.8 815 50.2
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.1e-199 699.5 799 52.3
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.9e-197 692.2 816 50.5
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 7.4e-193 678.3 845 49.1
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.1e-192 676.8 795 49.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 8.4e-189 664.8 823 46.9
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 6.7e-186 655.2 824 49.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 8.7e-186 654.8 821 51.4
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.3e-173 614.4 806 46.0
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-165 588.2 532 59.0
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 3.7e-152 543.1 603 52.6
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-141 508.1 603 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 5.0e-141 506.1 853 38.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 5.4e-135 486.1 863 39.2
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 2.0e-134 484.2 839 38.5
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.8e-131 473.8 820 39.5
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 4.0e-130 469.9 447 56.8
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.4e-127 460.7 392 65.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-108 398.7 385 59.5
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.9e-105 385.6 483 49.7
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.3e-101 374.4 934 30.3
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.6e-101 372.5 448 49.6
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.9e-97 359.0 307 58.6
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.4e-90 337.8 451 50.3
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 7.8e-86 322.8 444 43.9
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.3e-85 322.0 293 58.7
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-76 292.4 336 49.1
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 4.5e-73 280.4 200 69.5
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.3e-72 278.9 330 53.6
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 5.5e-71 273.5 239 62.3
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-68 265.8 282 59.9
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.5e-68 265.4 217 64.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 4.5e-65 253.8 228 54.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 7.7e-57 226.5 195 61.5
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.7e-56 225.3 956 25.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.9e-53 214.2 272 54.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.5e-52 211.5 274 54.7
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.7e-51 207.6 150 66.7
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.5e-49 202.2 276 52.5
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-49 201.8 408 41.4
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 4.7e-46 190.7 203 52.2
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 7.9e-46 189.9 169 70.4
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.1e-39 169.5 229 45.9
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.4e-39 169.1 197 61.9
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 4.2e-39 167.5 200 61.0
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 9.4e-39 166.4 172 56.4
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.7e-38 164.1 170 55.9
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-33 149.4 150 52.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 4.5e-33 147.5 118 70.3
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 2.6e-28 131.7 670 24.6
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-26 125.9 175 41.1
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.1e-26 124.8 518 24.3
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 5.9e-25 120.6 71 73.2
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 6.5e-24 117.1 134 50.0
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 9.4e-23 113.2 738 24.3
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.7e-22 111.7 112 50.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.6e-20 105.1 115 51.3
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.3e-16 92.0 106 50.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.7e-14 84.3 76 60.5
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.7e-11 74.7 61 54.1
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.0e-09 68.9 55 56.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 5.0e-08 64.3 53 54.7
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.0e-08 64.3 50 58.0
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.5e-07 62.0 65 47.7
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.8e-06 58.5 209 26.8


User provided reference genes

Program Settings