Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 8.2e-261 903.3 488 100.0
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 7.6e-206 720.7 491 81.9
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 4.2e-204 714.9 491 81.5
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 2.6e-198 695.7 499 78.6
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.9e-197 692.2 512 76.6
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 5.5e-188 661.4 511 73.8
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 2.0e-174 616.3 459 76.3
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 2.0e-174 616.3 459 76.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.7e-171 605.9 501 70.9
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 8.2e-168 594.3 510 67.8
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.7e-157 560.1 513 65.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.1e-151 540.8 447 68.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.2e-141 506.5 564 57.6
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 3.0e-117 426.4 517 51.8
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 3.5e-102 376.3 549 46.8
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 9.9e-97 358.2 530 46.2
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.2e-95 353.2 533 45.6
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 4.6e-94 349.4 541 44.5
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.1e-92 344.7 519 43.0
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 5.6e-92 342.4 534 44.8
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 9.6e-92 341.7 536 45.3
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 4.7e-91 339.3 516 43.0
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 6.2e-91 339.0 544 43.8
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 8.1e-91 338.6 525 44.4
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.4e-90 337.8 543 43.6
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.8e-90 337.4 539 43.0
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.4e-90 337.0 534 43.6
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 3.1e-90 336.7 529 45.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 6.9e-90 335.5 521 46.3
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.2e-89 334.7 523 44.0
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 3.4e-89 333.2 531 43.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 7.6e-89 332.0 521 43.2
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.3e-88 331.3 556 43.2
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 2.2e-88 330.5 522 42.3
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 4.9e-88 329.3 539 42.5
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 8.4e-88 328.6 539 43.2
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.1e-87 328.2 529 44.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.9e-87 327.4 549 42.1
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.2e-87 326.6 532 43.4
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.6e-86 324.3 541 43.3
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 2.1e-86 323.9 516 44.4
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.1e-86 323.9 526 44.7
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.7e-86 323.6 528 42.8
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.5e-86 323.2 537 43.2
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.0e-85 321.6 531 44.1
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.0e-85 320.1 525 43.2
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 5.1e-85 319.3 539 43.8
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.1e-84 318.2 546 43.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.9e-84 317.4 589 40.2
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.3e-83 314.7 523 42.8
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 2.4e-82 310.5 517 42.4
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.1e-82 310.1 571 41.9
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.1e-82 310.1 509 41.8
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.1e-82 310.1 531 40.3
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 3.4e-81 306.6 533 40.2
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 3.4e-81 306.6 546 42.1
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.4e-81 306.6 529 41.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 5.8e-81 305.8 512 42.8
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 7.6e-81 305.4 535 41.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 9.9e-81 305.1 521 42.6
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.7e-80 304.3 488 44.3
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.7e-80 304.3 518 43.8
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.2e-80 303.9 533 42.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.2e-80 303.9 529 40.8
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 6.4e-80 302.4 542 42.1
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.1e-79 301.6 533 41.1
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 2.4e-79 300.4 548 41.8
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.2e-79 300.1 551 42.6
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 3.2e-79 300.1 524 41.6
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 9.3e-79 298.5 531 39.5
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.2e-78 298.1 550 42.4
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.2e-78 298.1 533 40.5
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-78 298.1 574 40.1
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 4.6e-78 296.2 530 39.1
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.3e-77 294.7 552 41.3
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.3e-77 294.7 574 38.9
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 3.9e-77 293.1 246 72.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 5.1e-77 292.7 549 41.3
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 8.7e-77 292.0 469 43.3
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 5.6e-76 289.3 521 39.9
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.1e-75 287.3 510 40.2
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.1e-75 287.3 564 40.4
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 8.1e-75 285.4 590 39.0
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 4.0e-74 283.1 568 38.4
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.3e-74 282.7 539 39.5
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 9.0e-74 282.0 535 39.8
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.6e-73 280.4 512 40.8
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 4.5e-73 279.6 546 38.1
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.6e-73 278.9 539 39.3
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 9.9e-73 278.5 544 37.7
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 6.7e-69 265.8 638 36.5
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 7.4e-68 262.3 567 38.3
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.2e-67 259.2 437 42.6
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.8e-66 257.7 519 37.2
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.2e-64 250.8 521 39.0
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.8e-64 250.0 574 37.1
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 8.4e-64 248.8 514 37.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 7.1e-63 245.7 542 37.8
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.1e-62 244.2 451 40.4
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.3e-59 235.0 331 44.4
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 6.3e-59 232.6 511 35.6
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 4.5e-57 226.5 465 38.3
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.8e-56 223.4 302 44.7
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 4.6e-54 216.5 546 35.0
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 8.7e-53 212.2 290 43.1
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 4.8e-51 206.5 546 35.3
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 6.3e-51 206.1 277 42.2
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.1e-50 203.8 556 32.9
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-49 201.8 466 35.6
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 3.8e-48 196.8 534 34.1
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 6.1e-46 189.5 450 35.1
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.8e-42 177.9 376 36.7
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 5.5e-39 166.4 326 34.0
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 9.7e-36 155.6 561 29.2
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.7e-35 154.8 393 34.9
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 3.7e-35 153.7 487 31.0
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.3e-32 145.2 561 28.9
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.5e-31 141.0 439 34.2
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-29 135.2 440 34.5
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 3.3e-28 130.6 216 37.0
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 5.3e-26 123.2 250 36.8
C03p92730 Brassica napus HOM05D002452 ORTHO05D006766 3.1e-18 97.4 65 80.0
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.1e-18 97.4 381 27.6
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.9e-15 88.2 141 31.9
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.2e-15 87.0 214 31.3
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.0e-13 82.4 62 59.7
A06p29200 Brassica napus HOM05D000817 ORTHO05D000702 2.3e-13 81.3 74 63.5
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 5.7e-12 76.6 164 43.9
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.3e-11 75.5 128 45.3
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-09 68.9 101 47.5
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.2e-09 68.9 148 35.1
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 4.3e-07 60.5 199 33.7


User provided reference genes

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