Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 5.3e-209 731.5 602 100.0
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 1.7e-207 726.5 604 99.7
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 1.1e-169 600.9 600 83.3
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 9.1e-169 597.8 600 79.7
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 8.6e-159 564.7 608 74.5
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 1.4e-140 504.2 612 74.2
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 1.2e-96 358.2 632 67.7
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.1e-96 357.5 627 49.9
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 2.4e-92 344.0 589 50.8
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 2.0e-91 340.9 630 50.3
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 3.2e-81 307.0 625 48.5
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 2.8e-77 293.9 273 63.0
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 9.4e-73 278.9 617 44.4
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 2.1e-56 224.6 258 51.9
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 3.3e-41 174.1 208 48.1
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.0e-39 169.1 203 47.3
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 6.8e-39 166.4 220 46.8
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 6.8e-39 166.4 220 46.8
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 3.4e-38 164.1 253 43.1
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 3.4e-38 164.1 220 45.5
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 2.9e-37 161.0 249 41.4
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.4e-36 158.7 259 39.4
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 7.0e-36 156.4 265 40.4
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 3.5e-35 154.1 254 39.0
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 1.0e-34 152.5 224 42.9
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 3.0e-34 151.0 234 43.2
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 3.9e-34 150.6 261 39.5
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 6.6e-34 149.8 208 44.7
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 6.6e-34 149.8 196 45.9
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.1e-33 149.1 185 45.4
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 3.3e-33 147.5 209 43.1
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 3.3e-33 147.5 257 38.5
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 5.6e-33 146.7 269 39.0
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 7.3e-33 146.4 261 39.5
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 9.5e-33 146.0 256 38.3
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.2e-32 145.6 207 42.5
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.2e-32 145.6 266 38.3
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 2.3e-31 141.4 204 43.6
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 3.1e-31 141.0 253 37.9
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 4.0e-31 140.6 252 37.3
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 2.0e-30 138.3 292 38.0
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.0e-30 138.3 230 37.8
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 3.4e-30 137.5 263 36.5
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.8e-30 136.7 232 38.8
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 9.8e-30 136.0 257 35.8
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 6.4e-29 133.3 219 39.7
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 6.4e-29 133.3 255 36.9
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 8.3e-29 132.9 199 39.2
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 8.3e-29 132.9 218 38.1
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 1.9e-28 131.7 253 36.8
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 2.4e-28 131.3 273 33.3
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 2.4e-28 131.3 260 36.2
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 7.0e-28 129.8 270 36.3
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 1.2e-27 129.0 229 38.9
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.6e-27 128.6 242 36.0
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 2.0e-27 128.3 219 38.4
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.7e-27 127.9 255 35.3
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 3.5e-27 127.5 261 37.9
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 3.5e-27 127.5 252 36.9
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 4.6e-27 127.1 202 38.6
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 1.0e-26 125.9 252 37.7
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.7e-26 125.2 191 43.5
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.9e-26 124.0 244 36.5
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 3.9e-26 124.0 228 37.7
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 5.0e-26 123.6 257 35.0
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 6.6e-26 123.2 172 41.3
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 1.1e-25 122.5 281 34.2
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.1e-25 122.5 244 34.4
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 2.5e-25 121.3 240 36.7
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 2.1e-24 118.2 224 37.5
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 3.6e-24 117.5 173 40.5
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 1.1e-23 115.9 200 37.5
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 5.2e-23 113.6 224 36.2
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 6.8e-23 113.2 204 38.7
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 1.2e-22 112.5 251 35.9
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.5e-22 112.1 190 41.1
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 2.0e-22 111.7 234 35.0
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 4.4e-22 110.5 173 39.3
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 7.5e-22 109.8 256 32.4
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 2.9e-21 107.8 209 35.9
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.9e-20 105.1 256 34.0
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 3.2e-20 104.4 230 37.8
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.2e-20 104.4 248 35.1
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.1e-20 104.0 229 37.1
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.4e-20 103.6 248 35.1
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 7.1e-20 103.2 220 34.1
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.6e-19 102.1 202 35.1
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 1.6e-19 102.1 168 40.5
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 4.6e-19 100.5 203 36.5
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 6.0e-19 100.1 170 39.4
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 2.3e-18 98.2 150 40.0
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 3.9e-18 97.4 265 32.5
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 5.1e-18 97.1 226 32.7
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 6.6e-18 96.7 245 34.3
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.1e-17 95.9 215 34.9
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.5e-17 95.5 236 34.7
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.3e-17 94.4 249 30.5
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 9.5e-17 92.8 247 32.0
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 9.5e-17 92.8 247 33.2
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 1.2e-16 92.4 230 30.0
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.6e-16 92.0 231 34.2
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 4.7e-16 90.5 144 40.3
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 6.2e-16 90.1 157 35.0
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.8e-15 88.6 221 33.0
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.2e-14 85.9 245 28.2
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.2e-14 85.9 220 34.1
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 1.2e-14 85.9 239 32.2
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.4e-14 84.3 240 32.9
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.2e-13 81.6 219 34.7
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 3.8e-13 80.9 210 30.0
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 8.4e-13 79.7 153 35.3
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 3.2e-12 77.8 241 30.3
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.7e-11 74.7 236 30.5
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 6.0e-11 73.6 170 35.3
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 5.1e-10 70.5 173 34.1
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 6.6e-10 70.1 225 28.9
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 1.5e-09 68.9 142 38.0
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 9.6e-09 66.2 129 39.5
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.2e-08 65.9 187 29.4
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.6e-08 65.5 187 29.4
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 2.8e-08 64.7 187 29.4
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 9.0e-07 59.7 106 34.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.2e-06 59.3 104 35.6


User provided reference genes

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