Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 2.6e-77 292.0 144 100.0
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 2.6e-77 292.0 144 100.0
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 5.7e-77 290.8 144 99.3
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 2.7e-74 282.0 144 95.1
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 2.7e-74 282.0 144 95.1
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 9.4e-72 273.5 144 93.8
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 9.4e-72 273.5 144 93.8
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 9.4e-72 273.5 144 93.8
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 6.1e-71 270.8 148 90.5
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 1.4e-70 269.6 144 92.4
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 1.4e-70 269.6 144 92.4
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 5.2e-70 267.7 148 90.5
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 5.7e-69 264.2 148 89.9
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 7.0e-67 257.3 149 88.6
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 2.7e-66 255.4 146 87.7
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 2.1e-63 245.7 145 84.8
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 1.0e-62 243.4 146 84.9
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 5.2e-62 241.1 144 84.0
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 3.3e-56 221.9 148 77.0
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 8.9e-54 213.8 145 75.2
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 8.9e-54 213.8 145 75.2
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 4.4e-53 211.5 145 74.5
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 1.1e-51 206.8 144 73.6
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 1.4e-51 206.5 144 72.2
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 5.4e-51 204.5 144 72.2
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 3.5e-50 201.8 145 73.8
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 3.5e-50 201.8 146 68.5
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 1.7e-49 199.5 143 66.4
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 5.0e-49 198.0 143 69.9
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 1.9e-48 196.1 144 70.8
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 2.8e-47 192.2 145 71.0
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 1.1e-46 190.3 144 66.7
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.4e-46 189.9 144 70.1
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.4e-46 189.9 144 70.1
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 1.8e-46 189.5 146 69.2
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 1.8e-46 189.5 143 64.3
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 3.1e-46 188.7 145 69.0
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 4.0e-46 188.3 145 69.0
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 5.2e-46 188.0 100 86.0
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 6.8e-46 187.6 143 65.7
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 6.8e-46 187.6 144 66.7
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 6.8e-46 187.6 143 67.8
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 1.2e-45 186.8 144 67.4
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.5e-45 186.4 144 68.8
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 2.6e-45 185.7 144 63.2
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 2.6e-45 185.7 145 67.6
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 2.6e-45 185.7 145 67.6
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 2.6e-45 185.7 119 73.1
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 5.8e-45 184.5 144 67.4
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 7.5e-45 184.1 147 62.6
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 1.3e-44 183.3 143 62.9
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 1.3e-44 183.3 141 63.8
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 1.3e-44 183.3 144 64.6
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 4.9e-44 181.4 144 61.1
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 4.9e-44 181.4 144 61.1
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 4.9e-44 181.4 144 66.0
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 1.1e-43 180.3 145 64.8
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.9e-43 179.5 142 64.1
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 1.9e-43 179.5 144 64.6
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 2.4e-43 179.1 144 64.6
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 2.4e-43 179.1 144 65.3
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 3.2e-43 178.7 145 61.4
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 4.1e-43 178.3 143 61.5
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 4.1e-43 178.3 143 61.5
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 5.4e-43 177.9 143 63.6
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 5.4e-43 177.9 139 63.3
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 7.0e-43 177.6 144 63.9
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 1.2e-42 176.8 144 61.8
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.6e-42 176.4 139 62.6
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 2.7e-42 175.6 143 61.5
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 2.7e-42 175.6 143 61.5
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 2.7e-42 175.6 148 62.8
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 2.7e-42 175.6 145 63.4
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 3.5e-42 175.3 148 62.2
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 4.6e-42 174.9 100 78.0
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 6.0e-42 174.5 100 77.0
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 6.0e-42 174.5 147 61.2
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 1.7e-41 172.9 147 59.2
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 2.3e-41 172.6 141 63.8
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 2.3e-41 172.6 139 61.2
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 3.0e-41 172.2 144 60.4
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 5.0e-41 171.4 145 62.8
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 5.0e-41 171.4 139 59.7
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 5.0e-41 171.4 144 61.8
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.1e-40 170.2 144 59.0
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 1.5e-40 169.9 145 59.3
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 1.5e-40 169.9 144 61.8
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 2.5e-40 169.1 139 60.4
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 4.3e-40 168.3 145 60.7
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 5.6e-40 167.9 99 77.8
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 9.5e-40 167.2 143 59.4
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.2e-39 166.8 143 58.7
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 1.6e-39 166.4 143 59.4
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 1.6e-39 166.4 100 76.0
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 3.6e-39 165.2 118 68.6
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 6.2e-39 164.5 99 77.8
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 6.2e-39 164.5 144 59.7
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 2.3e-38 162.5 132 61.4
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 4.0e-38 161.8 95 74.7
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 2.0e-37 159.5 110 69.1
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 7.5e-37 157.5 95 72.6
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 4.9e-36 154.8 103 68.0
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 8.3e-36 154.1 133 58.6
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 2.4e-35 152.5 106 69.8
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.3e-33 146.0 118 63.6
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 6.6e-33 144.4 106 66.0
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 6.6e-33 144.4 122 58.2
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 8.6e-33 144.1 127 53.5
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 2.5e-32 142.5 107 61.7
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 1.6e-31 139.8 105 61.0
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 2.1e-31 139.4 137 52.6
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 2.1e-31 139.4 137 52.6
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 2.2e-28 129.4 140 49.3
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 8.4e-28 127.5 75 84.0
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 7.1e-27 124.4 67 85.1
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 2.1e-26 122.9 102 52.0
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 7.8e-26 120.9 102 52.0
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 1.9e-24 116.3 116 51.7
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 3.3e-24 115.5 75 70.7
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 7.3e-24 114.4 119 51.3
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.8e-22 109.8 82 67.1
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 3.1e-22 109.0 117 47.9
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 1.3e-20 103.6 83 66.3
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.2e-18 97.1 58 81.0
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 2.1e-18 96.3 76 51.3
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 1.2e-13 80.5 56 76.8
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 1.5e-08 63.5 55 54.5


User provided reference genes

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