Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47337 Brassica carinata HOM05D008022 ORTHO05D010147 3.3e-68 261.9 166 100.0
C06p49540 Brassica napus HOM05D008022 ORTHO05D010147 5.4e-63 244.6 166 94.6
BolC6t39993H Brassica oleracea HOM05D008022 ORTHO05D010147 5.4e-63 244.6 166 94.6
BraA07t31648Z Brassica rapa HOM05D008022 ORTHO05D010147 4.3e-60 235.0 166 93.4
A07p41120 Brassica napus HOM05D008022 ORTHO05D010147 3.6e-59 231.9 166 92.2
BcaC08g47037 Brassica carinata HOM05D008022 ORTHO05D010147 2.0e-49 199.5 167 79.6
BraA02t07039Z Brassica rapa HOM05D008022 ORTHO05D010147 1.7e-40 169.9 179 73.2
BolC2t09304H Brassica oleracea HOM05D008022 ORTHO05D010147 5.4e-39 164.9 175 74.3
A02p20010 Brassica napus HOM05D008022 ORTHO05D010147 1.2e-38 163.7 186 69.4
BcaB05g24920 Brassica carinata HOM05D008022 ORTHO05D010147 2.7e-38 162.5 176 75.0
CARHR068950 Cardamine hirsuta HOM05D008022 ORTHO05D010147 6.7e-37 157.9 166 74.1
BcaC08g47338 Brassica carinata HOM05D008022 ORTHO05D010147 1.3e-35 153.7 65 100.0
AL2G35530 Arabidopsis lyrata HOM05D008022 ORTHO05D010147 1.2e-33 147.1 173 71.7
C02p34060 Brassica napus HOM05D008022 ORTHO05D010147 1.5e-33 146.7 178 68.5
BcaC08g45567 Brassica carinata HOM05D008022 ORTHO05D010147 6.2e-27 124.8 166 62.7
C06p32520 Brassica napus HOM05D008022 ORTHO05D010147 6.2e-27 124.8 166 62.7
BolC6t38374H Brassica oleracea HOM05D008022 ORTHO05D010147 6.2e-27 124.8 166 62.7
Carub.0002s2241 Capsella rubella HOM05D008022 ORTHO05D010147 2.9e-24 115.9 170 64.7
BraA07t30517Z Brassica rapa HOM05D008022 ORTHO05D010147 3.8e-24 115.5 166 62.0
AT1G75550 Arabidopsis thaliana HOM05D008022 ORTHO05D010147 5.0e-24 115.2 150 72.0
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 9.4e-15 84.3 67 55.2
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 1.2e-14 84.0 71 53.5
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 6.1e-14 81.6 74 51.4
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 1.4e-13 80.5 49 63.3
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 1.4e-13 80.5 83 45.8
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 1.1e-12 77.4 70 47.1
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 1.5e-12 77.0 71 47.9
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 1.5e-12 77.0 77 45.5
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 2.0e-12 76.6 78 41.0
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 2.5e-12 76.3 77 42.9
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 3.3e-12 75.9 80 45.0
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 3.3e-12 75.9 79 44.3
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 5.7e-12 75.1 73 50.7
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 9.7e-12 74.3 64 50.0
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 9.7e-12 74.3 69 50.7
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 9.7e-12 74.3 78 42.3
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 2.8e-11 72.8 53 56.6
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 4.8e-11 72.0 40 65.0
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 8.2e-11 71.2 40 65.0
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 8.2e-11 71.2 90 36.7
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 1.1e-10 70.9 85 41.2
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 1.1e-10 70.9 77 42.9
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 1.4e-10 70.5 77 41.6
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 1.8e-10 70.1 79 41.8
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 1.8e-10 70.1 40 62.5
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 3.1e-10 69.3 81 42.0
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 3.1e-10 69.3 56 55.4
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 4.1e-10 68.9 55 49.1
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 5.3e-10 68.6 60 50.0
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 5.3e-10 68.6 53 50.9
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 6.9e-10 68.2 51 52.9
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 2.0e-09 66.6 60 48.3
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 2.0e-09 66.6 69 44.9
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 2.0e-09 66.6 68 44.1
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 2.0e-09 66.6 68 44.1
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 3.4e-09 65.9 40 60.0
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 3.4e-09 65.9 68 44.1
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 7.7e-09 64.7 73 45.2
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 1.0e-08 64.3 61 45.9
Aqoxy6G02393 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 3.8e-08 62.4 58 50.0
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 6.5e-08 61.6 54 48.1
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 1.1e-07 60.8 50 52.0
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 1.4e-07 60.5 81 40.7
DCAR_017590 Daucus carota HOM05D000043 ORTHO05D000223 1.9e-07 60.1 52 50.0
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 3.2e-07 59.3 41 58.5
HPP92_017807 Vanilla planifolia HOM05D008022 ORTHO05D010147 5.5e-07 58.5 38 57.9
unitig_8.g4921 Utricularia gibba HOM05D008022 ORTHO05D010147 6.1e-06 55.1 61 41.0


User provided reference genes

Program Settings