Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-127 458.8 222 100.0
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-127 458.8 222 100.0
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-124 449.5 222 98.6
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 8.1e-123 443.7 240 92.1
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-116 422.5 222 92.3
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.5e-116 422.2 241 87.6
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 3.7e-107 391.7 219 86.8
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 4.5e-97 358.2 219 78.1
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.7e-96 356.3 219 77.6
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.7e-96 356.3 217 78.8
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.8e-96 355.1 219 78.1
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 5.0e-96 354.8 219 77.2
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 2.7e-94 349.0 217 77.0
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-93 346.3 217 77.0
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.3e-92 342.0 219 75.3
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 9.7e-92 340.5 221 76.5
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 7.7e-89 330.9 213 75.6
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.7e-88 329.7 251 66.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.8e-82 309.7 213 70.9
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 7.7e-81 304.3 218 65.6
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.0e-80 303.9 219 65.3
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.9e-80 302.4 218 65.6
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.8e-80 302.0 218 64.2
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 6.5e-80 301.2 218 64.7
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 8.5e-80 300.8 218 64.2
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.5e-79 299.3 219 63.9
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 4.2e-79 298.5 219 63.9
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 6.1e-78 294.7 213 63.4
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 8.0e-78 294.3 213 65.3
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-77 293.9 220 63.6
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.5e-76 290.0 217 65.0
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.0e-76 289.7 228 63.2
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 3.6e-70 268.9 209 63.2
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 2.3e-69 266.2 211 60.7
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 3.4e-68 262.3 218 61.0
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.7e-67 260.0 210 60.0
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.8e-66 256.5 207 61.4
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 2.4e-66 256.1 216 58.8
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 3.1e-66 255.8 201 61.2
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 4.1e-66 255.4 220 59.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 5.4e-66 255.0 217 58.1
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 5.4e-66 255.0 219 56.2
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 7.0e-66 254.6 216 61.1
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.6e-65 253.4 212 58.0
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.6e-65 253.4 216 57.4
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 2.7e-65 252.7 211 58.3
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 3.5e-65 252.3 211 58.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.5e-65 252.3 207 59.9
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 3.5e-65 252.3 204 59.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 5.9e-65 251.5 215 60.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 5.9e-65 251.5 212 57.5
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 7.7e-65 251.1 216 56.0
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.0e-64 250.8 219 57.1
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 6.5e-64 248.1 216 58.3
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.1e-63 247.3 217 56.7
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.5e-63 246.1 167 68.3
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.2e-63 245.7 205 58.0
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 4.2e-63 245.4 215 55.8
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 4.2e-63 245.4 210 59.0
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 4.2e-63 245.4 210 59.0
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 5.5e-63 245.0 209 57.4
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.5e-63 244.2 213 54.9
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 9.5e-63 244.2 238 52.9
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.2e-62 243.8 205 58.0
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.6e-62 243.4 200 60.5
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.7e-62 242.7 213 57.3
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 3.6e-62 242.3 212 56.6
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.4e-61 240.4 140 87.1
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.8e-61 240.0 216 56.0
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.8e-61 238.0 202 56.9
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.8e-61 238.0 202 56.9
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.8e-61 238.0 212 56.1
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.2e-60 237.3 210 56.7
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.5e-60 236.9 203 54.7
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.0e-60 236.5 210 53.8
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 2.6e-60 236.1 209 54.5
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.4e-60 235.7 215 54.0
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 3.4e-60 235.7 200 57.5
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.7e-60 235.0 197 58.4
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.3e-59 233.8 208 54.3
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.2e-59 233.0 216 53.2
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 2.2e-59 233.0 210 55.2
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 4.9e-59 231.9 196 58.2
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.9e-59 231.9 196 57.7
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.9e-59 231.9 196 57.7
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 4.9e-59 231.9 206 53.9
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 8.3e-59 231.1 199 54.8
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.1e-58 230.7 223 52.9
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 5.4e-58 228.4 211 54.0
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.0e-58 228.0 203 53.7
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 7.0e-58 228.0 196 57.1
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.2e-57 227.3 205 56.1
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.6e-57 226.9 210 55.7
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.6e-57 226.9 216 52.3
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.0e-57 226.5 215 54.4
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.7e-57 226.1 212 53.8
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.7e-57 226.1 216 53.2
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 3.5e-57 225.7 213 54.5
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 3.5e-57 225.7 215 50.2
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.5e-57 225.7 190 56.3
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 4.5e-57 225.3 196 55.6
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 7.7e-57 224.6 213 50.7
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 7.7e-57 224.6 200 52.5
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.3e-56 223.8 213 53.1
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 5.0e-56 221.9 208 52.9
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 5.0e-56 221.9 191 56.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 5.0e-56 221.9 212 53.3
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 6.6e-56 221.5 221 51.6
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 8.6e-56 221.1 210 52.4
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 8.6e-56 221.1 197 53.8
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.5e-55 220.3 172 59.3
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 5.6e-55 218.4 213 51.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.2e-54 217.2 216 53.2
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.6e-54 216.9 212 50.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 6.1e-54 214.9 218 50.5
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 4.0e-53 212.2 206 50.0
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.0e-53 212.2 193 53.9
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 4.0e-53 212.2 209 48.8
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 5.2e-53 211.8 213 52.1
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 6.8e-53 211.5 214 50.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 3.7e-51 205.7 210 49.5
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 4.9e-51 205.3 211 47.4
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.1e-50 204.1 212 46.7
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.8e-50 203.4 213 48.4
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 2.0e-49 199.9 221 48.9
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 3.5e-49 199.1 214 47.7
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.0e-48 197.6 189 52.4
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 6.6e-48 194.9 116 81.0
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.1e-47 194.1 212 45.8
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.3e-47 192.2 173 56.6
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.8e-46 189.5 194 47.9
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 6.8e-45 184.9 196 45.4
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.5e-44 183.7 194 46.4
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.4e-44 182.6 215 43.3
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.2e-43 179.9 194 45.4
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.9e-43 179.5 196 48.5
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 3.7e-43 179.1 196 45.4
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 6.4e-43 178.3 196 45.9
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 6.4e-43 178.3 197 46.2
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.1e-42 177.6 110 74.5
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 2.4e-42 176.4 208 44.2
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 7.0e-42 174.9 175 53.7
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-38 163.3 92 82.6
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.1e-37 161.0 171 46.8
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.3e-37 159.8 203 42.4
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.1e-37 159.5 220 43.2
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.5e-36 157.1 191 41.4
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.7e-35 153.7 139 54.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 9.2e-34 147.9 110 64.5
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 4.6e-33 145.6 110 63.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 6.0e-33 145.2 127 53.5
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.3e-32 144.1 120 59.2
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 4.3e-31 139.0 216 35.6
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.2e-30 137.5 221 38.9
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.7e-30 135.6 173 44.5
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 6.2e-30 135.2 101 63.4
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.1e-29 134.4 111 60.4
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 4.0e-29 132.5 204 38.2
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.2e-28 131.0 132 48.5
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.9e-27 126.3 99 62.6
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.8e-27 125.9 152 46.7
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 6.4e-27 125.2 157 45.9
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.2e-25 120.9 116 52.6
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 2.3e-24 116.7 134 44.8
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 2.5e-23 113.2 89 58.4
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 9.6e-23 111.3 95 55.8
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 4.7e-22 109.0 87 58.6
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 8.1e-22 108.2 63 81.0
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 4.4e-20 102.4 211 32.7
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.4e-18 96.7 113 53.1
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 5.4e-18 95.5 77 58.4
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.2e-17 94.4 77 57.1
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 3.5e-17 92.8 149 35.6
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.3e-16 90.9 107 42.1
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.1e-16 89.0 85 44.7
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 6.6e-16 88.6 86 55.8
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 9.3e-10 68.2 67 56.7
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 9.3e-10 68.2 64 56.2
BolC3t21388H Brassica oleracea HOM05D000901 ORTHO05D032089 5.1e-08 62.4 46 67.4


User provided reference genes

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