Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 1.2e-117 426.8 254 100.0
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 9.7e-104 380.6 268 87.3
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 7.4e-96 354.4 266 81.2
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 2.4e-94 349.4 267 83.5
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 3.1e-94 349.0 266 84.2
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 1.4e-78 297.0 205 84.4
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.4e-78 297.0 278 76.3
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 5.9e-77 291.6 277 72.9
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 4.4e-72 275.4 275 63.3
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 5.7e-72 275.0 278 66.9
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 5.7e-72 275.0 268 68.7
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 3.7e-71 272.3 274 65.7
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 4.8e-71 271.9 271 69.4
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 3.0e-65 252.7 270 65.6
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 2.0e-64 250.0 272 64.7
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.7e-63 246.9 272 64.3
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.8e-63 246.1 272 64.0
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 5.2e-49 198.7 288 58.7
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 1.7e-47 193.7 134 83.6
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 2.8e-42 176.4 255 55.7
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 4.9e-39 165.6 262 45.4
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 1.4e-38 164.1 274 46.0
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-36 157.5 271 45.0
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.7e-36 157.1 275 41.8
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 1.7e-36 157.1 274 40.9
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.7e-36 157.1 275 41.8
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 3.0e-36 156.4 261 47.5
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 3.9e-36 156.0 275 41.8
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 5.1e-36 155.6 274 40.5
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 9.5e-35 151.4 261 47.1
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 9.5e-35 151.4 261 47.1
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 4.7e-34 149.1 259 43.2
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 7.6e-32 141.7 261 42.9
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 7.6e-32 141.7 261 42.9
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 7.6e-32 141.7 266 40.6
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 9.9e-32 141.4 255 42.4
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 8.4e-31 138.3 269 40.5
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 1.4e-30 137.5 262 38.9
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 1.2e-29 134.4 265 39.6
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-28 131.0 244 42.2
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.3e-28 131.0 255 38.4
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 1.1e-27 127.9 257 38.9
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 3.3e-27 126.3 267 37.8
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 3.3e-27 126.3 264 38.3
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 3.3e-27 126.3 257 38.5
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 5.6e-27 125.6 266 36.1
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.2e-26 124.4 263 39.2
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 6.2e-26 122.1 262 39.7
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.4e-25 120.9 266 37.6
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.4e-25 120.2 256 37.1
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 5.2e-25 119.0 255 36.5
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 2.0e-24 117.1 267 35.6
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.6e-24 116.7 260 36.5
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 5.8e-24 115.5 255 42.0
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 7.6e-24 115.2 258 34.9
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 2.2e-23 113.6 270 38.5
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.2e-23 113.6 270 34.4
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 2.9e-23 113.2 260 36.5
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 4.9e-23 112.5 268 38.1
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.9e-23 112.5 257 32.7
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 4.9e-23 112.5 263 33.1
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 6.4e-23 112.1 268 39.6
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 6.4e-23 112.1 257 32.3
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 8.4e-23 111.7 271 35.4
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.1e-22 111.3 257 31.9
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 1.4e-22 110.9 274 36.5
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.4e-22 110.2 261 36.4
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 3.2e-22 109.8 251 35.1
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 3.2e-22 109.8 272 34.6
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 4.2e-22 109.4 263 35.4
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 9.3e-22 108.2 254 37.0
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 9.3e-22 108.2 254 37.0
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 1.2e-21 107.8 265 34.7
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.1e-21 107.1 262 33.2
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 2.7e-21 106.7 285 36.5
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.7e-21 106.7 264 34.5
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 3.5e-21 106.3 260 36.9
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 2.3e-20 103.6 285 35.8
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 2.3e-20 103.6 263 34.2
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 3.0e-20 103.2 259 35.1
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 3.0e-20 103.2 256 34.4
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 3.9e-20 102.8 257 34.2
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 3.9e-20 102.8 256 35.9
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 5.1e-20 102.4 302 39.4
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 5.1e-20 102.4 258 30.6
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 6.6e-20 102.1 275 35.6
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 8.7e-20 101.7 292 42.1
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 1.1e-19 101.3 287 33.8
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.1e-19 101.3 262 39.7
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.5e-19 100.9 264 37.5
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 2.5e-19 100.1 258 35.3
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 2.5e-19 100.1 296 35.1
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 2.5e-19 100.1 260 34.2
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 3.3e-19 99.8 254 32.7
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 4.3e-19 99.4 261 36.8
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 5.6e-19 99.0 271 38.0
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 1.3e-18 97.8 261 39.8
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.6e-18 97.4 215 39.5
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 2.1e-18 97.1 249 36.5
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 2.1e-18 97.1 264 39.0
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 2.8e-18 96.7 266 35.3
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 3.6e-18 96.3 259 34.4
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 4.8e-18 95.9 258 31.8
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 8.1e-18 95.1 259 37.5
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 8.1e-18 95.1 291 30.2
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 1.1e-17 94.7 270 37.8
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 1.1e-17 94.7 271 31.0
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.4e-17 93.6 266 33.5
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 2.4e-17 93.6 264 33.3
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 4.0e-17 92.8 255 32.9
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 6.9e-17 92.0 262 35.9
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 6.9e-17 92.0 267 34.8
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.2e-16 91.3 273 32.2
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 3.4e-16 89.7 272 29.0
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 5.8e-16 89.0 289 30.8
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 7.6e-16 88.6 276 32.2
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 7.6e-16 88.6 258 36.8
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 9.9e-16 88.2 257 32.7
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 9.9e-16 88.2 258 36.0
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 1.3e-15 87.8 254 32.3
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 1.7e-15 87.4 278 31.3
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 1.7e-15 87.4 269 30.5
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 2.2e-15 87.0 263 31.9
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 2.9e-15 86.7 263 38.0
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 3.8e-15 86.3 281 29.2
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 4.9e-15 85.9 275 32.0
BcaC08g47296 Brassica carinata HOM05D003173 ORTHO05D003546 8.4e-15 85.1 42 95.2
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 1.1e-14 84.7 280 30.7
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 2.4e-14 83.6 267 30.7
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 2.4e-14 83.6 261 34.5
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 3.2e-14 83.2 257 34.2
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 4.2e-14 82.8 256 31.2
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 5.4e-14 82.4 305 28.9
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.6e-13 80.9 200 37.0
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 2.1e-13 80.5 252 32.1
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 2.7e-13 80.1 213 32.9
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 6.0e-13 79.0 270 30.7
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 7.9e-13 78.6 232 33.2
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 1.0e-12 78.2 268 36.6
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.3e-12 77.8 265 34.7
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.0e-12 76.6 265 34.7
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 5.1e-12 75.9 257 29.6
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 5.1e-12 75.9 204 30.9
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 6.7e-12 75.5 269 33.5
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 8.7e-12 75.1 253 31.2
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 8.7e-12 75.1 270 30.7
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 1.9e-11 73.9 185 33.0
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.9e-11 73.9 124 47.6
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 1.9e-11 73.9 251 31.1
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 2.5e-11 73.6 266 27.4
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 5.6e-11 72.4 105 53.3
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 9.6e-11 71.6 168 36.9
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 1.3e-10 71.2 212 33.5
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 2.8e-10 70.1 262 29.0
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 3.6e-10 69.7 282 29.1
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 4.8e-10 69.3 306 28.1
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 8.1e-10 68.6 264 26.9
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 2.4e-09 67.0 262 28.6
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 4.0e-09 66.2 100 42.0
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 2.0e-08 63.9 254 29.5
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 2.0e-08 63.9 241 27.4
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 3.4e-08 63.2 285 25.6
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 9.9e-08 61.6 178 30.9
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 3.8e-07 59.7 249 28.1
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 3.8e-07 59.7 212 29.7
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 8.4e-07 58.5 195 29.7
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 1.9e-06 57.4 241 29.5
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 2.4e-06 57.0 243 26.3
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 3.2e-06 56.6 187 28.3
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 4.2e-06 56.2 202 28.7
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 5.5e-06 55.8 177 33.9
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 9.3e-06 55.1 278 28.1
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 9.3e-06 55.1 241 30.3
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 9.3e-06 55.1 191 29.8


User provided reference genes

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