Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 2.1e-57 225.7 133 100.0
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-54 216.5 133 91.0
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 1.3e-54 216.5 133 90.2
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 3.2e-50 201.8 133 86.5
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 6.7e-48 194.1 134 83.6
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 4.4e-47 191.4 135 83.0
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 6.1e-41 171.0 133 74.4
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 9.7e-39 163.7 136 77.2
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 2.0e-36 156.0 132 72.7
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.3e-35 153.3 137 73.0
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.7e-33 145.6 138 70.3
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 1.0e-32 143.7 84 89.3
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.8e-32 142.9 131 71.0
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 1.2e-31 140.2 137 67.9
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 6.3e-30 134.4 133 66.2
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 1.2e-28 130.2 133 64.7
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-28 130.2 133 64.7
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.2e-28 130.2 133 64.7
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 3.2e-26 122.1 139 61.2
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 3.7e-22 108.6 115 53.9
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 2.4e-21 105.9 137 54.7
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 4.5e-20 101.7 133 47.4
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 5.0e-19 98.2 140 47.9
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 8.6e-19 97.4 133 46.6
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 8.6e-19 97.4 133 46.6
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 8.6e-19 97.4 140 48.6
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 4.2e-18 95.1 140 45.7
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 4.2e-18 95.1 133 45.9
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 4.2e-18 95.1 133 45.9
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 4.2e-18 95.1 133 45.9
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.2e-17 93.6 140 42.9
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-17 93.6 140 42.9
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 1.2e-17 93.6 140 42.9
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.6e-17 93.2 133 45.1
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.8e-17 92.4 116 45.7
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 3.6e-17 92.0 98 50.0
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 4.7e-17 91.7 139 43.9
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 8.0e-17 90.9 140 41.4
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 8.0e-17 90.9 140 41.4
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.0e-16 90.5 116 44.8
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 5.2e-16 88.2 136 40.4
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 8.9e-16 87.4 101 46.5
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 8.9e-16 87.4 136 41.2
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 2.0e-15 86.3 139 44.6
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.6e-15 85.9 98 45.9
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 3.4e-15 85.5 98 49.0
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 7.5e-15 84.3 98 46.9
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.7e-14 83.2 97 47.4
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.2e-14 82.8 102 43.1
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.8e-14 82.4 116 49.1
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 2.8e-14 82.4 102 43.1
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 3.7e-14 82.0 112 45.5
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.7e-14 82.0 102 43.1
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 3.7e-14 82.0 124 39.5
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 6.3e-14 81.3 134 41.0
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 6.3e-14 81.3 98 46.9
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 8.3e-14 80.9 99 47.5
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.1e-13 80.5 101 42.6
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.1e-13 80.5 96 47.9
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 2.4e-13 79.3 118 46.6
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 2.4e-13 79.3 137 37.2
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 3.2e-13 79.0 99 44.4
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 5.4e-13 78.2 100 42.0
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 5.4e-13 78.2 113 40.7
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 5.4e-13 78.2 109 41.3
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 9.2e-13 77.4 109 45.9
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 9.2e-13 77.4 100 42.0
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 1.2e-12 77.0 99 45.5
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 1.6e-12 76.6 97 46.4
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 1.6e-12 76.6 111 50.5
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 2.0e-12 76.3 123 41.5
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 2.7e-12 75.9 103 51.5
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 3.5e-12 75.5 123 41.5
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 3.5e-12 75.5 98 41.8
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 4.5e-12 75.1 100 52.0
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 4.5e-12 75.1 105 51.4
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 5.9e-12 74.7 133 39.8
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 7.8e-12 74.3 98 41.8
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.0e-11 73.9 104 41.3
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.3e-11 73.6 121 38.0
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 1.7e-11 73.2 100 50.0
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.7e-11 73.2 99 50.5
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 1.7e-11 73.2 104 43.3
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 2.9e-11 72.4 112 48.2
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 2.9e-11 72.4 105 41.9
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.9e-11 72.4 113 47.8
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 3.9e-11 72.0 103 39.8
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 5.0e-11 71.6 107 44.9
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 5.0e-11 71.6 140 36.4
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 5.0e-11 71.6 109 36.7
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 6.6e-11 71.2 118 35.6
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 6.6e-11 71.2 98 50.0
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 6.6e-11 71.2 93 36.6
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 6.6e-11 71.2 98 50.0
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 8.6e-11 70.9 103 49.5
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 1.1e-10 70.5 133 31.6
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 1.1e-10 70.5 100 41.0
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.1e-10 70.5 98 39.8
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 1.1e-10 70.5 101 52.5
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.1e-10 70.5 99 41.4
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 1.5e-10 70.1 98 49.0
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 1.5e-10 70.1 131 30.5
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.9e-10 69.7 131 35.1
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 2.5e-10 69.3 111 39.6
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.3e-10 68.9 86 44.2
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 3.3e-10 68.9 99 42.4
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 4.3e-10 68.6 103 39.8
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 4.3e-10 68.6 98 40.8
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 5.6e-10 68.2 108 46.3
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 5.6e-10 68.2 140 37.1
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 5.6e-10 68.2 100 43.0
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 5.6e-10 68.2 105 47.6
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 5.6e-10 68.2 113 35.4
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 9.5e-10 67.4 96 40.6
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 9.5e-10 67.4 103 37.9
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 1.2e-09 67.0 99 44.4
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 1.2e-09 67.0 106 36.8
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 1.2e-09 67.0 98 41.8
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 1.2e-09 67.0 112 36.6
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 2.1e-09 66.2 120 42.5
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 2.1e-09 66.2 103 39.8
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 2.1e-09 66.2 106 40.6
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 2.8e-09 65.9 96 42.7
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 2.8e-09 65.9 105 38.1
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.8e-09 65.9 97 40.2
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.6e-09 65.5 105 38.1
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.6e-09 65.5 105 39.0
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 4.7e-09 65.1 110 42.7
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 4.7e-09 65.1 109 38.5
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 6.1e-09 64.7 105 38.1
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 6.1e-09 64.7 114 36.0
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 6.1e-09 64.7 109 38.5
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.8e-08 63.2 101 43.6
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 4.0e-08 62.0 102 40.2
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 4.0e-08 62.0 107 39.3
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 4.0e-08 62.0 105 41.9
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 4.0e-08 62.0 100 42.0
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 5.2e-08 61.6 99 39.4
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 6.8e-08 61.2 115 31.3
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 1.2e-07 60.5 107 35.5
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 1.2e-07 60.5 97 35.1
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 1.2e-07 60.5 138 36.2
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 1.5e-07 60.1 99 41.4
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.5e-07 60.1 129 31.0
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 5.8e-07 58.2 101 46.5
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 9.8e-07 57.4 104 35.6
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 9.8e-07 57.4 104 35.6
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 1.7e-06 56.6 109 32.1
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 2.2e-06 56.2 104 35.6
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 4.9e-06 55.1 93 34.4
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 6.4e-06 54.7 93 37.6
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 8.3e-06 54.3 58 53.4


User provided reference genes

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