Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 4.2e-136 488.0 247 100.0
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 1.9e-125 452.6 249 93.6
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 3.3e-125 451.8 249 93.6
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 9.7e-125 450.3 249 93.2
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 6.5e-121 437.6 240 93.3
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 2.7e-119 432.2 246 90.2
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 1.5e-114 416.4 255 84.7
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 8.5e-113 410.6 251 84.1
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 5.5e-112 407.9 251 83.3
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 8.8e-110 400.6 253 83.4
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 1.1e-109 400.2 257 81.7
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 3.5e-106 388.7 267 76.0
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 5.3e-99 364.8 256 72.7
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 3.8e-81 305.4 256 64.8
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 3.4e-77 292.4 216 67.1
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 2.9e-76 289.3 214 67.8
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 3.2e-75 285.8 205 71.2
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 6.6e-73 278.1 197 70.6
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 1.5e-72 276.9 198 69.7
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 5.6e-72 275.0 232 61.2
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 1.6e-71 273.5 193 72.5
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 2.8e-71 272.7 251 60.2
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 2.8e-71 272.7 195 69.7
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 6.1e-71 271.6 238 62.6
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 1.4e-70 270.4 202 64.9
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 4.0e-70 268.9 197 67.0
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 4.0e-70 268.9 188 69.7
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 5.2e-70 268.5 200 66.5
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 6.8e-70 268.1 262 55.7
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 8.9e-70 267.7 222 63.1
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 3.4e-69 265.8 226 62.4
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 1.3e-68 263.8 260 55.0
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 1.7e-68 263.5 215 62.8
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 6.4e-68 261.5 214 62.6
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 4.1e-67 258.8 227 58.6
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 4.1e-67 258.8 217 62.7
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 4.1e-67 258.8 184 69.0
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 5.4e-67 258.5 200 68.0
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 5.4e-67 258.5 199 65.8
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 9.2e-67 257.7 189 69.3
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 1.2e-66 257.3 236 59.7
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 2.0e-66 256.5 230 57.0
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 2.7e-66 256.1 192 66.7
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 4.6e-66 255.4 227 60.4
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 6.0e-66 255.0 250 56.8
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 7.8e-66 254.6 241 56.8
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 2.3e-65 253.1 196 63.3
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 3.9e-65 252.3 203 59.6
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 8.6e-65 251.1 237 54.9
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 8.6e-65 251.1 195 63.6
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 1.1e-64 250.8 217 61.8
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 1.1e-64 250.8 200 62.0
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 1.9e-64 250.0 201 61.7
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 1.9e-64 250.0 231 56.3
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 1.9e-64 250.0 225 59.1
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 2.5e-64 249.6 247 51.8
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 5.6e-64 248.4 195 62.6
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 5.6e-64 248.4 212 57.1
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 7.3e-64 248.1 224 58.5
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 6.2e-63 245.0 209 57.9
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 1.1e-62 244.2 197 60.9
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 1.4e-62 243.8 188 62.2
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 1.4e-62 243.8 195 62.1
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 1.4e-62 243.8 195 62.1
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 4.0e-62 242.3 198 59.1
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 5.2e-62 241.9 233 58.8
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 6.8e-62 241.5 195 61.5
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 8.9e-62 241.1 210 58.6
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 1.2e-61 240.7 168 67.3
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 2.0e-61 240.0 237 55.7
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 2.6e-61 239.6 167 68.9
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 4.4e-61 238.8 265 52.1
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 4.4e-61 238.8 172 64.5
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 4.4e-61 238.8 196 61.2
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 7.5e-61 238.0 220 55.9
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 9.8e-61 237.7 198 62.6
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 1.3e-60 237.3 198 62.1
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 1.3e-60 237.3 162 68.5
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 1.7e-60 236.9 198 62.1
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 2.2e-60 236.5 196 60.2
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 2.9e-60 236.1 218 56.4
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 2.9e-60 236.1 180 63.9
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 4.9e-60 235.3 266 51.1
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 6.4e-60 235.0 198 61.6
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 5.4e-59 231.9 168 66.1
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.6e-58 230.3 183 60.7
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 2.1e-58 229.9 195 62.1
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 3.5e-58 229.2 198 62.1
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 2.3e-57 226.5 194 57.7
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 2.3e-57 226.5 250 53.2
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.3e-56 222.6 267 51.3
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 3.3e-56 222.6 174 62.6
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 1.6e-55 220.3 238 50.4
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 1.2e-53 214.2 194 54.6
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 9.9e-53 211.1 195 57.4
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 8.4e-52 208.0 303 42.6
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.9e-48 196.8 121 73.6
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 3.1e-46 189.5 188 52.1
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 3.8e-44 182.6 243 43.6
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 2.4e-43 179.9 195 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 1.7e-41 173.7 179 46.4
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 3.6e-39 166.0 137 65.0
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 3.0e-33 146.4 179 38.5
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 5.3e-30 135.6 188 44.1
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 9.9e-29 131.3 170 39.4
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 7.9e-26 121.7 66 81.8
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.1e-22 111.3 106 55.7
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.2e-21 107.8 91 59.3
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 6.5e-20 102.1 233 30.5
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 8.4e-20 101.7 196 34.2
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 2.5e-16 90.1 141 37.6
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 6.3e-15 85.5 75 53.3
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 1.9e-08 63.9 106 39.6
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 4.3e-08 62.8 51 58.8
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.1e-06 58.2 32 81.2
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 1.1e-06 58.2 32 81.2


User provided reference genes

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