Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 2.8e-169 598.6 311 100.0
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 8.4e-142 507.3 304 90.5
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 3.1e-136 488.8 304 83.2
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 3.8e-134 481.9 304 82.9
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 3.2e-133 478.8 304 82.6
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 4.3e-130 468.4 304 80.6
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 1.4e-128 463.4 304 78.3
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.0e-127 459.5 304 77.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 5.8e-127 458.0 304 77.3
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.1e-125 453.8 302 77.5
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.1e-125 453.8 305 78.4
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 2.3e-123 446.0 303 76.2
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.1e-121 439.5 351 69.8
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.1e-117 427.2 304 72.7
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 6.7e-115 417.9 304 70.1
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 3.1e-104 382.5 303 63.0
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 2.0e-103 379.8 298 64.4
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.0e-99 367.5 300 63.0
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 5.1e-99 365.2 303 62.4
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 5.1e-99 365.2 304 60.5
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 5.1e-99 365.2 302 62.9
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 1.1e-98 364.0 300 62.7
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.1e-98 364.0 302 59.9
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 5.7e-98 361.7 302 61.3
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 9.7e-98 360.9 297 60.3
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 9.7e-98 360.9 299 60.5
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 1.7e-97 360.1 303 60.1
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 4.8e-97 358.6 304 59.5
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.4e-96 357.1 297 59.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.4e-96 357.1 300 59.7
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 2.0e-95 353.2 300 59.7
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 2.6e-95 352.8 316 58.9
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 2.6e-95 352.8 298 60.4
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 3.5e-95 352.4 299 59.2
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.3e-94 350.5 301 58.5
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.7e-94 350.1 302 58.6
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 2.9e-94 349.4 306 58.5
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 2.9e-94 349.4 261 65.5
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 5.0e-94 348.6 304 58.6
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 1.1e-93 347.4 298 58.1
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 1.1e-93 347.4 302 57.9
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.5e-93 347.1 299 58.5
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.9e-93 346.7 297 58.9
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 1.9e-93 346.7 299 59.2
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 2.5e-93 346.3 309 58.6
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 3.2e-93 345.9 301 58.5
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 3.2e-93 345.9 299 59.9
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 4.2e-93 345.5 298 57.7
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.6e-92 343.6 298 57.4
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.6e-92 342.4 297 57.2
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.8e-91 340.1 300 56.3
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 6.7e-91 338.2 298 59.1
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.0e-90 336.7 302 55.6
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.0e-90 336.7 302 56.0
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 9.7e-90 334.3 300 56.7
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 4.8e-89 332.0 337 52.8
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 4.8e-89 332.0 294 56.8
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 4.8e-89 332.0 300 55.3
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.4e-88 330.5 307 55.0
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 2.4e-88 329.7 300 56.0
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 3.1e-88 329.3 285 58.6
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 5.3e-88 328.6 300 56.3
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 5.3e-88 328.6 298 55.4
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.2e-87 327.4 298 55.4
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 3.5e-87 325.9 300 55.0
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 5.9e-87 325.1 284 58.8
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 5.9e-87 325.1 300 55.0
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 1.3e-86 323.9 300 55.3
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.3e-86 323.9 297 54.9
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.2e-86 323.2 300 54.7
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 2.2e-86 323.2 294 56.8
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 8.5e-86 321.2 342 52.6
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 1.1e-85 320.9 303 50.8
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.1e-85 320.9 274 60.2
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.5e-85 320.5 300 53.0
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 1.5e-85 320.5 332 50.0
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 3.2e-85 319.3 298 53.4
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 1.6e-84 317.0 299 53.8
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 1.6e-84 317.0 329 50.5
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 2.1e-84 316.6 302 54.0
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 2.7e-84 316.2 297 53.5
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 6.1e-84 315.1 298 53.4
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 1.8e-83 313.5 297 53.9
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 5.2e-83 312.0 308 52.6
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 3.7e-81 305.8 295 53.6
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.1e-80 304.3 302 53.0
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.4e-80 303.9 292 52.1
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.9e-78 296.2 315 49.8
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.9e-77 293.5 283 55.8
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 4.7e-76 288.9 276 56.2
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.0e-75 287.7 273 54.9
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.8e-75 287.0 287 54.4
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 9.8e-74 281.2 278 55.4
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 4.9e-73 278.9 260 54.2
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.1e-72 277.7 357 43.7
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 1.1e-69 267.7 306 48.0
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 4.7e-68 262.3 219 59.8
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 7.8e-63 245.0 298 45.0
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.7e-62 243.8 303 44.2
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 1.5e-61 240.7 297 45.1
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.9e-61 240.4 298 45.3
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.2e-60 237.7 297 46.5
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 1.2e-58 231.1 274 48.2
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 7.5e-58 228.4 228 53.1
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 4.9e-57 225.7 202 57.4
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 7.8e-55 218.4 275 46.2
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 3.0e-54 216.5 215 52.1
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 5.6e-53 212.2 179 56.4
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.6e-52 209.5 216 51.4
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 3.6e-52 209.5 267 41.6
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 6.8e-51 205.3 178 53.9
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 6.2e-44 182.2 151 57.0
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 8.6e-38 161.8 332 32.2
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.5e-37 161.0 184 51.1
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 3.6e-36 156.4 188 46.8
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.6e-36 156.4 157 54.1
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 8.1e-36 155.2 121 64.5
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.5e-34 151.0 161 48.4
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.9e-33 146.7 103 65.0
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 7.1e-32 142.1 227 42.7
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 2.1e-31 140.6 292 31.8
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 9.6e-29 131.7 194 41.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 4.9e-25 119.4 284 30.3
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 6.0e-23 112.5 123 48.8
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 4.3e-21 106.3 257 29.2
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 1.1e-19 101.7 266 27.4
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 6.9e-19 99.0 96 51.0
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 7.1e-16 89.0 69 56.5
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 2.1e-12 77.4 59 61.0
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.8e-12 77.0 72 56.9
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 4.0e-11 73.2 85 49.4
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.0e-10 70.9 57 59.6
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.3e-09 68.2 73 50.7
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.1e-08 65.1 56 51.8
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 2.5e-08 63.9 75 44.0


User provided reference genes

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