Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 4.8e-180 634.4 326 100.0
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 3.8e-60 236.1 291 56.0
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 2.8e-55 219.9 260 60.8
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 6.2e-55 218.8 259 57.9
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 2.6e-53 213.4 245 61.6
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 5.8e-53 212.2 296 53.0
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 2.5e-51 206.8 291 52.6
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 1.2e-50 204.5 262 57.6
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 3.3e-48 196.4 219 62.1
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 2.4e-46 190.3 271 54.6
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 2.9e-44 183.3 272 55.1
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 2.9e-44 183.3 261 55.2
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 1.4e-41 174.5 250 52.0
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 1.8e-41 174.1 242 53.7
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 2.8e-39 166.8 253 53.8
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 1.1e-38 164.9 239 54.0
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 9.1e-38 161.8 216 57.9
BcaC03g15614 Brassica carinata HOM05D010473 ORTHO05D007577 4.5e-29 132.9 144 60.4
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 3.2e-27 126.7 254 43.3
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 4.1e-22 109.8 271 41.7
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 5.9e-13 79.3 204 35.8
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.3e-12 78.2 260 31.9
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 2.2e-12 77.4 239 33.5
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 2.9e-12 77.0 201 34.3
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 3.2e-11 73.6 194 37.1
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 4.2e-11 73.2 116 46.6
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 5.5e-11 72.8 135 41.5
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 2.1e-10 70.9 160 42.5
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 8.0e-10 68.9 160 41.9
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 8.0e-10 68.9 212 33.5
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 1.0e-09 68.6 106 44.3
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 1.0e-09 68.6 222 32.0
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 1.0e-09 68.6 183 36.6
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 1.8e-09 67.8 156 32.7
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 2.3e-09 67.4 145 39.3
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 2.3e-09 67.4 231 33.8
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 3.0e-09 67.0 136 41.9
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 4.0e-09 66.6 306 31.0
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 4.0e-09 66.6 180 37.8
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 5.2e-09 66.2 166 37.3
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 6.8e-09 65.9 176 34.1
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 1.2e-08 65.1 241 34.4
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 1.2e-08 65.1 235 33.2
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.2e-08 65.1 297 29.3
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 1.2e-08 65.1 222 31.5
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 1.2e-08 65.1 287 32.1
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 1.5e-08 64.7 196 31.6
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 2.0e-08 64.3 256 33.6
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 2.6e-08 63.9 228 32.9
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 2.6e-08 63.9 177 36.7
SGA_v2.0_scaffold92G28233 Striga asiatica HOM05D007378 ORTHO05D007577 3.4e-08 63.5 136 37.5
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 5.7e-08 62.8 103 47.6
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 5.7e-08 62.8 190 35.8
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 7.5e-08 62.4 258 31.4
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 9.8e-08 62.0 183 33.9
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 1.3e-07 61.6 246 35.4
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 1.7e-07 61.2 151 38.4
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 1.7e-07 61.2 117 41.9
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 2.2e-07 60.8 135 40.7
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 2.2e-07 60.8 115 42.6
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 2.8e-07 60.5 131 38.2
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 4.8e-07 59.7 247 31.6
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 4.8e-07 59.7 259 30.5
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 6.3e-07 59.3 182 35.2
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 8.3e-07 58.9 206 33.0
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 8.3e-07 58.9 192 34.4
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 8.3e-07 58.9 112 43.8
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 8.3e-07 58.9 176 34.7
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 1.4e-06 58.2 198 31.3
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 1.4e-06 58.2 241 30.7
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 3.1e-06 57.0 230 30.9
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 3.1e-06 57.0 242 31.0
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 4.1e-06 56.6 152 36.8
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 5.4e-06 56.2 177 36.7
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 7.0e-06 55.8 254 28.7
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 7.0e-06 55.8 205 32.2
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 7.0e-06 55.8 178 33.7
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 9.1e-06 55.5 150 38.7
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 9.1e-06 55.5 181 34.8


User provided reference genes

Program Settings