Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 5.7e-80 300.8 148 100.0
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 5.1e-73 277.7 148 91.2
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 5.7e-72 274.2 148 91.9
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 5.7e-72 274.2 148 91.9
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 3.7e-71 271.6 148 91.2
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 8.2e-71 270.4 148 90.5
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 8.2e-71 270.4 148 90.5
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 1.1e-70 270.0 148 88.5
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 9.1e-70 266.9 148 88.5
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 1.5e-69 266.2 148 87.8
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 1.5e-69 266.2 148 87.8
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 1.3e-68 263.1 148 87.2
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 1.3e-68 263.1 148 87.2
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 2.9e-68 261.9 149 86.6
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 1.0e-65 253.4 148 84.5
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 1.7e-63 246.1 148 82.4
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 2.4e-62 242.3 148 81.8
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 2.0e-61 239.2 148 82.4
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 3.0e-57 225.3 148 75.7
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 8.5e-52 207.2 149 71.8
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 8.5e-52 207.2 149 71.8
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.1e-51 206.8 149 71.1
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 1.2e-50 203.4 148 69.6
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 1.2e-50 203.4 148 68.9
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.8e-49 199.5 151 67.5
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 2.3e-49 199.1 149 71.1
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 5.2e-49 198.0 149 68.5
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 7.5e-48 194.1 147 66.0
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 9.8e-48 193.7 147 63.3
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 3.1e-46 188.7 148 65.5
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 4.1e-46 188.3 149 67.1
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 5.4e-46 188.0 148 64.9
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 1.6e-45 186.4 147 61.9
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 2.0e-45 186.0 149 66.4
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 2.7e-45 185.7 100 84.0
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 2.7e-45 185.7 151 62.3
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 2.7e-45 185.7 149 67.1
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 2.7e-45 185.7 145 62.1
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 3.5e-45 185.3 149 67.1
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 5.9e-45 184.5 148 64.2
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 5.9e-45 184.5 102 80.4
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 1.7e-44 183.0 149 63.1
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 1.7e-44 183.0 147 62.6
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 1.7e-44 183.0 148 64.9
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.3e-44 182.6 148 65.5
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.3e-44 182.6 148 65.5
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 2.9e-44 182.2 148 63.5
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 2.9e-44 182.2 147 62.6
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 6.5e-44 181.0 151 63.6
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 1.1e-43 180.3 148 62.8
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 1.1e-43 180.3 147 59.2
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 1.1e-43 180.3 148 61.5
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 1.5e-43 179.9 148 62.2
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 2.5e-43 179.1 148 63.5
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 3.3e-43 178.7 143 61.5
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 4.2e-43 178.3 148 62.8
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 5.5e-43 177.9 149 62.4
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 5.5e-43 177.9 148 61.5
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 7.2e-43 177.6 146 61.6
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 9.5e-43 177.2 148 62.2
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 9.5e-43 177.2 151 62.3
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 9.5e-43 177.2 143 60.8
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 1.2e-42 176.8 152 60.5
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.6e-42 176.4 148 59.5
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.6e-42 176.4 148 59.5
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 1.6e-42 176.4 152 59.9
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 2.1e-42 176.0 148 60.8
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 3.6e-42 175.3 147 58.5
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 3.6e-42 175.3 147 58.5
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 3.6e-42 175.3 149 58.4
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 4.7e-42 174.9 100 77.0
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 8.0e-42 174.1 147 61.2
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 1.0e-41 173.7 152 59.9
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 1.0e-41 173.7 148 60.1
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 1.8e-41 172.9 148 60.8
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 2.3e-41 172.6 147 58.5
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 2.3e-41 172.6 147 58.5
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 2.3e-41 172.6 120 69.2
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 2.3e-41 172.6 143 58.7
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 3.0e-41 172.2 100 75.0
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 8.9e-41 170.6 148 60.1
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 1.2e-40 170.2 143 58.7
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 1.5e-40 169.9 100 78.0
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 2.0e-40 169.5 148 60.1
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 2.0e-40 169.5 147 57.8
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 2.6e-40 169.1 144 60.4
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 5.7e-40 167.9 100 75.0
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 7.5e-40 167.5 149 61.1
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 9.8e-40 167.2 143 57.3
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.7e-39 166.4 148 57.4
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 2.8e-39 165.6 135 60.7
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 2.8e-39 165.6 135 61.5
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 2.8e-39 165.6 149 58.4
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 3.7e-39 165.2 99 75.8
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 3.7e-39 165.2 147 58.5
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 4.9e-39 164.9 100 75.0
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 3.1e-38 162.2 95 74.7
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 1.2e-37 160.2 147 56.5
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.2e-37 160.2 148 58.8
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 1.2e-37 160.2 111 66.7
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 3.5e-37 158.7 148 53.4
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 1.7e-36 156.4 103 68.9
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 1.9e-35 152.9 137 58.4
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.2e-34 150.2 106 67.9
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 4.0e-33 145.2 118 57.6
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 2.6e-32 142.5 101 61.4
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 2.6e-32 142.5 96 66.7
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.4e-32 142.1 106 64.2
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 4.9e-31 138.3 105 60.0
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 4.9e-31 138.3 122 58.2
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 4.9e-31 138.3 100 61.0
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 4.9e-31 138.3 100 61.0
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 1.1e-27 127.1 75 84.0
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 2.5e-27 125.9 144 47.9
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 8.0e-26 120.9 75 74.7
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 8.0e-26 120.9 102 51.0
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 1.1e-25 120.6 102 52.0
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 4.4e-24 115.2 120 50.0
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 5.8e-24 114.8 75 69.3
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 2.9e-23 112.5 120 50.0
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 2.1e-21 106.3 129 44.2
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.3e-20 103.6 86 61.6
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 9.5e-19 97.4 87 60.9
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 2.8e-18 95.9 76 51.3
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 2.8e-18 95.9 58 79.3
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 1.6e-13 80.1 56 76.8
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 1.5e-08 63.5 55 54.5


User provided reference genes

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