Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 0.0e+00 1276.5 853 100.0
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 9.2e-292 1006.9 850 81.8
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 9.0e-287 990.3 873 80.5
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 9.0e-287 990.3 873 80.5
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 2.5e-281 972.2 837 79.3
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 5.6e-281 971.1 839 78.3
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 3.9e-250 868.6 846 69.4
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 2.8e-232 809.3 846 64.3
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 8.0e-227 791.2 839 66.0
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 2.0e-225 786.6 841 64.8
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 3.5e-222 775.8 807 67.4
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 5.9e-222 775.0 851 63.9
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 6.0e-190 668.7 877 59.0
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 2.5e-132 477.2 860 52.9
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 5.1e-72 276.9 602 40.0
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 7.3e-71 273.1 630 39.4
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 6.8e-69 266.5 670 37.8
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 6.8e-69 266.5 609 40.9
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 1.5e-68 265.4 643 38.3
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 3.4e-68 264.2 628 39.6
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 4.9e-67 260.4 637 39.9
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 6.4e-67 260.0 652 35.3
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 8.4e-67 259.6 635 36.4
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 8.4e-67 259.6 617 37.8
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 1.1e-66 259.2 650 36.9
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 1.1e-66 259.2 628 39.2
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 5.4e-66 256.9 872 33.3
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 5.1e-64 250.4 656 36.3
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 4.3e-63 247.3 592 37.3
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 1.6e-62 245.4 634 36.6
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 1.6e-62 245.4 647 37.9
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 3.6e-62 244.2 639 36.2
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 6.2e-62 243.4 678 36.0
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 6.2e-62 243.4 641 34.9
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 1.1e-61 242.7 650 36.8
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 4.4e-60 237.3 650 34.9
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 9.9e-60 236.1 535 41.7
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 2.2e-59 235.0 531 42.7
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 6.4e-59 233.4 608 36.5
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 1.4e-58 232.3 627 35.4
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 1.9e-58 231.9 669 32.3
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 3.2e-58 231.1 591 37.4
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 5.4e-58 230.3 605 38.5
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 2.7e-57 228.0 693 33.6
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 1.0e-56 226.1 602 36.0
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 1.3e-56 225.7 682 32.1
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 2.3e-56 224.9 632 36.6
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 3.9e-56 224.2 679 32.7
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 2.5e-55 221.5 576 36.6
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 2.5e-55 221.5 626 33.7
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 3.3e-55 221.1 593 34.6
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 1.3e-54 219.2 611 35.2
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.6e-54 218.8 620 34.7
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 2.1e-54 218.4 624 36.5
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 3.6e-54 217.6 629 36.4
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 3.6e-54 217.6 653 36.8
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.4e-53 215.7 605 39.8
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 2.4e-53 214.9 623 36.6
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 6.9e-53 213.4 518 35.7
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 1.2e-52 212.6 640 31.4
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 2.6e-52 211.5 600 34.2
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 2.9e-51 208.0 655 34.2
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 6.4e-51 206.8 660 35.8
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 8.4e-51 206.5 654 34.1
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 7.1e-50 203.4 578 36.3
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.5e-49 201.1 576 33.9
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 7.9e-49 199.9 636 39.6
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 2.3e-48 198.4 590 38.1
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 5.1e-48 197.2 647 39.4
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 5.1e-48 197.2 639 35.7
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 6.6e-48 196.8 575 32.5
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 6.6e-48 196.8 598 36.0
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 5.6e-47 193.7 605 35.0
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 1.6e-46 192.2 588 33.8
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 3.6e-46 191.0 626 35.5
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 1.8e-45 188.7 496 36.5
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 1.2e-44 186.0 608 32.6
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.2e-44 186.0 611 33.9
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 5.8e-44 183.7 535 33.3
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 9.9e-44 183.0 598 34.1
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 9.9e-44 183.0 564 38.1
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 1.3e-43 182.6 610 34.6
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 9.3e-42 176.4 570 34.7
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 2.7e-41 174.9 616 33.4
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 4.6e-41 174.1 567 35.4
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 9.6e-39 166.4 546 35.0
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.1e-37 162.9 347 40.1
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 2.9e-35 154.8 599 32.1
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.4e-34 152.5 623 31.5
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 5.5e-34 150.6 584 32.7
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 1.3e-32 146.0 639 30.8
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 8.7e-32 143.3 613 28.7
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 3.3e-31 141.4 654 29.8
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 6.3e-30 137.1 580 31.0
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 1.1e-29 136.3 497 35.0
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 4.1e-29 134.4 564 31.6
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 4.1e-29 134.4 564 31.6
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 2.2e-27 128.6 286 39.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.5e-25 121.3 399 32.3
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 3.9e-24 117.9 635 28.0
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.5e-20 105.9 455 28.8
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 3.4e-20 104.8 230 38.7
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 1.9e-18 99.0 583 26.2
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.1e-17 95.5 336 31.5
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 3.6e-17 94.7 617 29.8
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.8e-13 82.4 565 27.4
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 7.7e-12 77.0 209 33.5
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 3.8e-11 74.7 498 26.3
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.8e-11 74.7 664 23.9
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.8e-11 74.7 664 23.9
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 4.2e-10 71.2 565 25.1
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 7.2e-10 70.5 215 33.0
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 6.3e-06 57.4 144 35.4


User provided reference genes

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