Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46921 Brassica carinata HOM05D003553 ORTHO05D005072 4.4e-59 231.1 117 100.0
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.9e-54 215.7 113 94.7
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 5.5e-54 214.2 113 96.5
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 5.5e-54 214.2 113 96.5
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 5.5e-54 214.2 113 96.5
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 2.1e-53 212.2 113 94.7
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 2.7e-53 211.8 113 93.8
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 2.7e-53 211.8 113 93.8
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 3.6e-53 211.5 113 92.9
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.3e-52 208.8 113 94.7
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 6.7e-52 207.2 113 94.7
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 2.0e-51 205.7 113 92.9
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.7e-50 202.6 113 90.3
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.2e-50 202.2 113 90.3
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 2.8e-50 201.8 113 90.3
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 2.8e-50 201.8 113 90.3
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 2.8e-50 201.8 113 90.3
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 2.8e-50 201.8 113 90.3
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 3.7e-50 201.4 113 90.3
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 3.7e-50 201.4 113 89.4
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 3.7e-50 201.4 113 91.2
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 6.5e-47 190.7 122 82.0
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.1e-46 189.9 113 85.8
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 9.4e-46 186.8 113 83.2
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.2e-45 186.4 113 82.3
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 4.7e-45 184.5 103 86.4
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-44 183.3 93 95.7
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 1.8e-44 182.6 113 79.6
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 1.8e-44 182.6 113 79.6
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.8e-44 182.6 113 81.4
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 4.0e-44 181.4 103 84.5
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 6.8e-44 180.6 113 81.4
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.6e-43 178.7 113 79.6
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 7.5e-43 177.2 113 78.8
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 7.5e-43 177.2 113 78.8
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-42 176.0 113 78.8
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 2.8e-42 175.3 113 77.0
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 3.7e-42 174.9 113 77.9
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 3.5e-40 168.3 101 81.2
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 7.7e-40 167.2 101 80.2
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.3e-39 166.4 110 74.5
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 2.3e-39 165.6 93 83.9
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 2.3e-39 165.6 93 83.9
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 2.9e-39 165.2 111 72.1
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 2.9e-39 165.2 109 73.4
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 3.8e-39 164.9 101 78.2
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 3.8e-39 164.9 101 78.2
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 3.8e-39 164.9 101 78.2
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 5.0e-39 164.5 93 82.8
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 5.0e-39 164.5 116 71.6
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 5.0e-39 164.5 107 73.8
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 6.6e-39 164.1 111 71.2
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 6.6e-39 164.1 112 70.5
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 8.6e-39 163.7 101 78.2
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.1e-38 163.3 99 79.8
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.5e-38 162.9 111 69.4
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 1.5e-38 162.9 98 79.6
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 3.3e-38 161.8 101 77.2
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 3.3e-38 161.8 101 76.2
FAN04G2395 Fragaria x ananassa HOM05D003553 ORTHO05D005072 4.2e-38 161.4 100 77.0
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 5.5e-38 161.0 101 77.2
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 5.5e-38 161.0 104 74.0
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 5.5e-38 161.0 101 77.2
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 7.2e-38 160.6 119 68.9
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 7.2e-38 160.6 99 75.8
MELO3C029757.2 Cucumis melo HOM05D003553 ORTHO05D005072 7.2e-38 160.6 101 77.2
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 7.2e-38 160.6 111 70.3
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 7.2e-38 160.6 110 70.0
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 9.5e-38 160.2 101 77.2
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 2.1e-37 159.1 102 74.5
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 2.1e-37 159.1 114 69.3
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 2.8e-37 158.7 101 74.3
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 2.8e-37 158.7 101 75.2
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 3.6e-37 158.3 101 76.2
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 3.6e-37 158.3 109 68.8
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 4.7e-37 157.9 111 69.4
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 4.7e-37 157.9 114 68.4
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 6.1e-37 157.5 102 73.5
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 6.1e-37 157.5 110 70.0
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 6.1e-37 157.5 110 70.0
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 8.0e-37 157.1 101 71.3
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 8.0e-37 157.1 111 68.5
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 8.0e-37 157.1 106 71.7
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.0e-36 156.8 138 61.6
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 1.4e-36 156.4 93 81.7
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 1.4e-36 156.4 102 74.5
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 1.8e-36 156.0 101 76.2
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 1.8e-36 156.0 101 74.3
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 2.3e-36 155.6 101 75.2
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 3.0e-36 155.2 101 74.3
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 4.0e-36 154.8 108 67.6
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 4.0e-36 154.8 111 68.5
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 4.0e-36 154.8 111 68.5
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 4.0e-36 154.8 96 76.0
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 5.2e-36 154.5 111 66.7
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 6.8e-36 154.1 114 68.4
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 8.9e-36 153.7 101 72.3
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 8.9e-36 153.7 97 74.2
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 1.5e-35 152.9 101 73.3
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 1.5e-35 152.9 101 73.3
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 1.5e-35 152.9 101 73.3
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 1.5e-35 152.9 101 73.3
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 1.5e-35 152.9 102 71.6
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 3.4e-35 151.8 101 72.3
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 5.7e-35 151.0 93 78.5
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 5.7e-35 151.0 93 76.3
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 1.3e-34 149.8 107 67.3
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 1.7e-34 149.4 101 68.3
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 1.7e-34 149.4 93 78.5
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 1.7e-34 149.4 100 73.0
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 1.1e-33 146.7 93 76.3
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 2.4e-33 145.6 93 72.0
TPR.G5572 Trifolium pratense HOM05D003553 ORTHO05D005072 3.1e-33 145.2 97 73.2
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 4.1e-33 144.8 98 72.4
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 4.1e-33 144.8 101 67.3
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 5.4e-33 144.4 105 69.5
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 5.4e-33 144.4 140 56.4
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 9.2e-33 143.7 100 68.0
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 2.7e-32 142.1 100 70.0
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 7.8e-32 140.6 93 71.0
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 1.3e-31 139.8 93 71.0
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.6e-29 132.9 99 68.7
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 4.9e-26 121.3 120 55.0
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 6.4e-26 120.9 113 53.1
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 7.0e-25 117.5 104 58.7
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 1.6e-24 116.3 93 62.4
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 7.8e-24 114.0 108 55.6
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 9.5e-22 107.1 62 82.3
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 2.1e-21 105.9 131 43.5
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 6.2e-21 104.4 91 58.2
C08p42930 Brassica napus HOM05D003553 ORTHO05D005072 4.0e-20 101.7 61 78.7
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 1.5e-19 99.8 107 50.5
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 2.0e-19 99.4 153 39.2
Sc23g0004640 Simmondsia chinensis HOM05D003553 ORTHO05D005072 2.6e-19 99.0 64 76.6
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 3.4e-19 98.6 84 61.9
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 2.9e-18 95.5 150 38.0
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 6.4e-18 94.4 128 40.6
MD14G1195300 Malus domestica HOM05D003553 ORTHO05D005072 6.4e-18 94.4 78 64.1
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 4.1e-17 91.7 130 40.8
BcaC07g41285 Brassica carinata HOM05D003553 ORTHO05D005072 9.2e-17 90.5 55 78.2
BolC8t51848H Brassica oleracea HOM05D003553 ORTHO05D005072 1.2e-16 90.1 55 78.2
A09p59630 Brassica napus HOM05D003553 ORTHO05D005072 6.4e-10 67.8 94 48.9
HanXRQChr01g0006271 Helianthus annuus HOM05D003553 ORTHO05D005072 5.4e-09 64.7 48 72.9
SEGI_34733 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 2.1e-08 62.8 72 41.7
BcaB01g02747 Brassica carinata HOM05D003553 ORTHO05D039541 1.1e-06 57.0 38 68.4
Ciclev10030655m.g Citrus clementina HOM05D004788 ORTHO05D006465 4.3e-06 55.1 95 34.7
FvH4_7g19690 Fragaria vesca HOM05D004788 ORTHO05D006465 4.3e-06 55.1 97 35.1
Glyma.10G211600 Glycine max HOM05D004788 ORTHO05D006465 4.3e-06 55.1 101 34.7
FAN01G2387 Fragaria x ananassa HOM05D004788 ORTHO05D006465 5.6e-06 54.7 97 35.1
QL08p056120 Quercus lobata HOM05D004788 ORTHO05D006465 5.6e-06 54.7 97 35.1
Cfa009500 Carpinus fangiana HOM05D002033 ORTHO05D002181 7.3e-06 54.3 98 36.7
FAN10G0780 Fragaria x ananassa HOM05D004788 ORTHO05D006465 7.3e-06 54.3 97 35.1
FAN10G0980 Fragaria x ananassa HOM05D004788 ORTHO05D006465 7.3e-06 54.3 97 35.1
Os06g0699700 Oryza sativa ssp. japonica HOM05D004788 ORTHO05D006465 9.5e-06 53.9 98 34.7


User provided reference genes

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