Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46896 Brassica carinata HOM05D003553 ORTHO05D026445 7.8e-42 173.3 85 100.0
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 2.8e-23 111.7 56 100.0
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 2.8e-23 111.7 56 100.0
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 3.7e-23 111.3 96 64.6
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 3.7e-23 111.3 96 64.6
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 1.1e-22 109.8 96 63.5
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 1.1e-22 109.8 96 63.5
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 1.4e-22 109.4 56 96.4
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 2.6e-21 105.1 56 91.1
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 3.4e-21 104.8 96 61.5
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 3.4e-21 104.8 56 91.1
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-20 103.2 56 89.3
BcaNung05961 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-20 103.2 56 89.3
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-20 103.2 56 89.3
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 1.0e-20 103.2 56 89.3
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.3e-20 102.8 56 91.1
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 2.2e-20 102.1 96 61.5
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 2.9e-20 101.7 56 89.3
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.9e-20 101.7 56 87.5
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 6.5e-20 100.5 56 87.5
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 5.5e-19 97.4 96 56.2
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 5.5e-19 97.4 56 83.9
AL1G31410 Arabidopsis lyrata HOM05D003553 ORTHO05D026445 9.3e-19 96.7 81 61.7
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.5e-18 94.7 56 83.9
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 4.6e-18 94.4 56 80.4
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 3.9e-17 91.3 56 76.8
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.5e-16 89.4 56 75.0
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 2.5e-16 88.6 56 73.2
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 5.7e-16 87.4 56 73.2
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 5.7e-16 87.4 56 80.4
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 7.4e-16 87.0 80 57.5
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 7.4e-16 87.0 56 73.2
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.6e-15 85.9 56 75.0
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 6.3e-15 84.0 56 67.9
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 6.3e-15 84.0 56 67.9
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 6.3e-15 84.0 56 67.9
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 1.4e-14 82.8 56 71.4
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 1.4e-14 82.8 56 71.4
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 2.4e-14 82.0 56 69.6
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 2.4e-14 82.0 56 66.1
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 2.4e-14 82.0 56 69.6
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 2.4e-14 82.0 56 69.6
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 9.0e-14 80.1 73 53.4
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 1.2e-13 79.7 56 67.9
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 1.5e-13 79.3 56 67.9
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 1.5e-13 79.3 56 66.1
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 5.9e-13 77.4 57 64.9
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 7.7e-13 77.0 55 63.6
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 7.7e-13 77.0 57 61.4
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 1.0e-12 76.6 57 61.4
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 1.3e-12 76.3 77 53.2
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.7e-12 75.9 56 64.3
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 1.7e-12 75.9 56 62.5
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 1.7e-12 75.9 56 62.5
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 2.2e-12 75.5 57 63.2
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 2.2e-12 75.5 57 63.2
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 2.9e-12 75.1 56 62.5
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 3.8e-12 74.7 56 60.7
Aa31LG9G8980 Aethionema arabicum HOM05D003553 ORTHO05D026445 3.8e-12 74.7 46 78.3
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 3.8e-12 74.7 56 60.7
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 5.0e-12 74.3 56 62.5
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 5.0e-12 74.3 57 59.6
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.1e-11 73.2 56 60.7
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.1e-11 73.2 56 60.7
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 1.1e-11 73.2 56 62.5
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.4e-11 72.8 56 62.5
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.9e-11 72.4 56 60.7
MD14G1195500 Malus domestica HOM05D003553 ORTHO05D005072 1.9e-11 72.4 55 60.0
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 2.5e-11 72.0 56 60.7
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.5e-11 72.0 56 60.7
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 2.5e-11 72.0 56 58.9
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 3.2e-11 71.6 56 55.4
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 4.2e-11 71.2 56 58.9
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.2e-11 71.2 57 59.6
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 5.5e-11 70.9 57 59.6
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 5.5e-11 70.9 56 58.9
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 7.2e-11 70.5 57 59.6
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 7.2e-11 70.5 57 59.6
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 7.2e-11 70.5 56 58.9
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 9.4e-11 70.1 56 60.7
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.6e-10 69.3 57 57.9
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.6e-10 69.3 56 58.9
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 1.6e-10 69.3 56 55.4
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 6.1e-10 67.4 57 57.9
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 7.9e-10 67.0 56 58.9
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 1.8e-09 65.9 56 55.4
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 2.3e-09 65.5 56 57.1
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 3.0e-09 65.1 58 55.2
COL.COLO4_05912 Corchorus olitorius HOM05D003553 ORTHO05D026445 3.9e-09 64.7 57 54.4
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 5.1e-09 64.3 56 53.6
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 5.1e-09 64.3 57 56.1
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 6.7e-09 63.9 59 52.5
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 8.8e-09 63.5 56 50.0
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 1.5e-08 62.8 56 51.8
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 1.9e-08 62.4 56 55.4
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.5e-08 62.0 58 53.4
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 4.3e-08 61.2 56 51.8
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 4.3e-08 61.2 56 48.2
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 5.7e-08 60.8 57 56.1
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 7.4e-08 60.5 55 52.7
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 1.7e-07 59.3 58 51.7
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 2.8e-07 58.5 59 50.8
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 3.7e-07 58.2 56 53.6
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 1.4e-06 56.2 57 47.4
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 3.1e-06 55.1 56 48.2
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 4.1e-06 54.7 59 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 6.9e-06 53.9 90 35.6
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 6.9e-06 53.9 56 50.0


User provided reference genes

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