Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46887 Brassica carinata HOM05D002453 ORTHO05D002107 6.7e-113 411.4 331 100.0
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 4.2e-67 259.2 202 69.8
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 5.2e-49 199.1 204 51.5
Sp5g29730 Schrenkiella parvula HOM05D002453 ORTHO05D002107 1.7e-44 184.1 152 62.5
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 7.3e-43 178.7 206 48.5
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 1.2e-42 177.9 206 47.6
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 1.0e-41 174.9 204 47.1
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 1.8e-41 174.1 206 44.7
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 8.9e-41 171.8 202 46.0
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 1.5e-40 171.0 206 46.1
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 1.5e-40 171.0 204 46.6
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 1.5e-40 171.0 205 44.9
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.4e-40 169.9 204 46.1
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.4e-40 169.9 204 46.1
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 7.5e-40 168.7 206 45.6
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 7.5e-40 168.7 204 44.1
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 7.5e-40 168.7 217 41.9
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 7.5e-40 168.7 217 41.9
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 9.8e-40 168.3 202 45.0
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 1.7e-39 167.5 203 44.3
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.2e-39 167.2 206 45.1
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 2.9e-39 166.8 206 44.2
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 4.9e-39 166.0 206 45.1
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 6.4e-39 165.6 205 44.4
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 6.4e-39 165.6 203 43.8
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 8.3e-39 165.2 204 44.1
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 1.4e-38 164.5 206 44.7
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 1.4e-38 164.5 202 43.6
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 1.9e-38 164.1 206 42.2
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 4.1e-38 162.9 215 41.9
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 7.0e-38 162.2 206 44.2
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 9.2e-38 161.8 201 43.8
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 1.2e-37 161.4 201 43.8
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 1.3e-36 157.9 217 41.0
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 2.3e-36 157.1 191 46.6
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 2.3e-36 157.1 204 45.1
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 2.3e-36 157.1 204 45.1
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.5e-35 154.5 206 43.2
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.9e-35 154.1 206 42.2
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.2e-34 151.4 206 41.7
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 1.6e-34 151.0 201 42.3
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 8.1e-34 148.7 203 40.4
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 4.0e-33 146.4 205 39.0
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 8.9e-33 145.2 206 40.3
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 1.5e-32 144.4 206 41.3
GSVIVG01008016001 Vitis vinifera HOM05D002453 ORTHO05D002107 2.6e-32 143.7 182 45.6
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 3.4e-32 143.3 203 38.4
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 4.4e-32 142.9 206 41.3
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 5.8e-32 142.5 204 43.1
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 5.8e-32 142.5 206 38.8
Gohir.A12G177000 Gossypium hirsutum HOM05D002453 ORTHO05D002107 9.8e-32 141.7 178 45.5
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 9.8e-32 141.7 217 41.5
Gohir.D12G179500 Gossypium hirsutum HOM05D002453 ORTHO05D002107 1.7e-31 141.0 178 44.9
Gorai.008G192600 Gossypium raimondii HOM05D002453 ORTHO05D002107 1.7e-31 141.0 178 44.9
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 2.2e-31 140.6 217 39.6
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 2.2e-31 140.6 206 40.3
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 2.9e-31 140.2 180 43.3
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 2.9e-31 140.2 172 45.3
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 2.9e-31 140.2 174 45.4
Actinidia37632 Actinidia chinensis HOM05D002453 ORTHO05D002107 3.7e-31 139.8 152 47.4
SEGI_15100 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 3.7e-31 139.8 204 40.7
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 1.4e-30 137.9 217 38.7
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 1.9e-30 137.5 204 41.2
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 1.9e-30 137.5 204 41.2
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 9.2e-30 135.2 203 39.9
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 7.8e-29 132.1 206 37.4
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 1.5e-27 127.9 189 41.3
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 5.6e-27 125.9 204 35.3
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 7.3e-27 125.6 188 41.0
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 1.6e-26 124.4 208 35.6
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 1.6e-26 124.4 182 40.7
Lalb_Chr07g0177921 Lupinus albus HOM05D002453 ORTHO05D002107 2.1e-26 124.0 204 40.7
EL10Ac5g10989 Beta vulgaris HOM05D002453 ORTHO05D002107 1.8e-25 120.9 181 38.7
ECA247G2160 Erigeron canadensis HOM05D002453 ORTHO05D002107 1.8e-25 120.9 150 44.7
BcaC08g46890 Brassica carinata HOM05D002453 ORTHO05D002107 1.2e-24 118.2 65 84.6
A07p40350 Brassica napus HOM05D002453 ORTHO05D002107 3.4e-24 116.7 101 62.4
AL2G34470 Arabidopsis lyrata HOM05D002453 ORTHO05D002107 9.9e-24 115.2 101 59.4
BolC6t39902H Brassica oleracea HOM05D002453 ORTHO05D002107 9.9e-24 115.2 101 61.4
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 2.2e-23 114.0 196 34.7
C06p48690 Brassica napus HOM05D002453 ORTHO05D002107 2.9e-23 113.6 100 62.0
BraA07t31576Z Brassica rapa HOM05D002453 ORTHO05D002107 2.9e-23 113.6 100 62.0
AT1G74580 Arabidopsis thaliana HOM05D002453 ORTHO05D002107 1.4e-22 111.3 101 59.4
Aa31LG4G4820 Aethionema arabicum HOM05D002453 ORTHO05D002107 7.1e-22 109.0 104 57.7
Carub.0002s2137 Capsella rubella HOM05D002453 ORTHO05D002107 1.2e-21 108.2 102 55.9
CARHR067850 Cardamine hirsuta HOM05D002453 ORTHO05D002107 1.0e-20 105.1 101 54.5
Thhalv10018169m.g Eutrema salsugineum HOM05D002453 ORTHO05D002107 1.3e-20 104.8 100 56.0
ECA247G1303 Erigeron canadensis HOM05D002453 ORTHO05D002107 6.6e-20 102.4 151 41.7
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 1.2e-18 98.2 139 41.7
Os07g0101200 Oryza sativa ssp. japonica HOM05D002453 ORTHO05D002107 1.5e-16 91.3 139 41.0
MD06G1192500 Malus domestica HOM05D002453 ORTHO05D002107 8.4e-15 85.5 109 43.1
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 1.9e-14 84.3 144 36.8
MELO3C001976.2 Cucumis melo HOM05D002453 ORTHO05D002107 1.7e-12 77.8 95 45.3
Oeu016166.1 Olea europaea HOM05D002453 ORTHO05D002107 1.1e-11 75.1 63 57.1
Sopen06g008520 Solanum pennellii HOM05D002453 ORTHO05D002107 3.4e-08 63.5 102 35.3
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 2.4e-06 57.4 180 25.6
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla HOM05D002986 ORTHO05D003966 9.3e-06 55.5 133 29.3


User provided reference genes

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