Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 3.1e-115 418.7 248 100.0
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 1.2e-90 337.0 252 81.3
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 5.9e-90 334.7 248 77.8
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 8.6e-89 330.9 249 74.7
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 5.2e-78 295.0 252 74.2
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 1.2e-77 293.9 262 69.5
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 6.4e-76 288.1 248 71.0
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 5.4e-75 285.0 248 69.0
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 1.2e-74 283.9 262 67.9
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 3.5e-74 282.3 249 69.9
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 3.5e-74 282.3 248 69.0
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 9.5e-72 274.2 263 63.5
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 8.1e-71 271.2 254 63.4
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 2.3e-70 269.6 246 63.4
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 1.2e-69 267.3 255 63.1
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 1.5e-69 266.9 257 64.2
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 7.5e-69 264.6 255 63.1
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 9.2e-67 257.7 255 62.0
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 1.6e-66 256.9 194 77.3
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 2.1e-66 256.5 255 62.0
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 7.8e-66 254.6 194 74.7
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 1.7e-60 236.9 247 62.3
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 5.1e-49 198.7 252 52.0
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 5.3e-46 188.7 232 53.9
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 2.3e-33 146.7 255 42.7
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 6.1e-18 95.5 248 32.7
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 1.5e-16 90.9 275 33.8
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 4.3e-16 89.4 251 39.0
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 1.7e-15 87.4 254 36.6
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 6.3e-15 85.5 86 61.6
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 1.7e-12 77.4 104 50.0
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 1.7e-12 77.4 240 33.3
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 2.2e-12 77.0 241 38.2
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 2.2e-12 77.0 266 30.8
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 3.8e-12 76.3 241 38.6
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 5.0e-12 75.9 247 30.8
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 5.0e-12 75.9 174 37.4
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 5.0e-12 75.9 252 37.3
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 1.9e-11 73.9 249 32.1
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 1.9e-11 73.9 248 31.5
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 2.5e-11 73.6 178 36.0
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 2.5e-11 73.6 253 32.4
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.5e-11 73.6 247 30.4
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 2.5e-11 73.6 247 30.4
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 2.5e-11 73.6 184 35.3
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 3.2e-11 73.2 235 31.5
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 3.2e-11 73.2 265 37.0
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 3.2e-11 73.2 252 32.1
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 4.2e-11 72.8 235 30.2
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 7.2e-11 72.0 242 30.2
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 7.2e-11 72.0 268 33.6
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 9.4e-11 71.6 233 35.6
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.7e-10 70.1 270 33.0
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 3.6e-10 69.7 258 32.2
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 3.6e-10 69.7 273 29.3
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 4.7e-10 69.3 187 38.0
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 4.7e-10 69.3 263 33.8
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 4.7e-10 69.3 263 33.8
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 6.1e-10 68.9 185 34.6
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 6.1e-10 68.9 66 59.1
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 7.9e-10 68.6 253 30.8
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 1.4e-09 67.8 55 67.3
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 1.4e-09 67.8 246 37.8
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 1.4e-09 67.8 223 32.3
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 1.8e-09 67.4 244 32.4
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 1.8e-09 67.4 246 30.9
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 2.3e-09 67.0 242 32.2
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 2.3e-09 67.0 112 44.6
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 3.0e-09 66.6 194 34.0
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.9e-09 66.2 72 55.6
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 3.9e-09 66.2 71 54.9
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.9e-09 66.2 148 37.2
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 3.9e-09 66.2 237 28.7
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 3.9e-09 66.2 57 61.4
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 5.1e-09 65.9 268 32.5
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 6.7e-09 65.5 235 30.2
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 8.8e-09 65.1 269 30.5
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 8.8e-09 65.1 51 66.7
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.5e-08 64.3 181 34.3
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 2.0e-08 63.9 188 30.9
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 2.0e-08 63.9 260 28.5
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.0e-08 63.9 76 50.0
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.6e-08 63.5 116 41.4
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 2.6e-08 63.5 140 37.9
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.6e-08 63.5 270 31.9
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.6e-08 63.5 256 27.7
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 2.6e-08 63.5 70 54.3
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 2.6e-08 63.5 65 56.9
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 2.6e-08 63.5 179 33.5
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 3.3e-08 63.2 68 52.9
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 3.3e-08 63.2 71 52.1
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 3.3e-08 63.2 185 33.0
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 4.4e-08 62.8 249 33.7
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 4.4e-08 62.8 177 32.8
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 4.4e-08 62.8 249 29.3
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 4.4e-08 62.8 176 31.2
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 5.7e-08 62.4 254 34.3
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 5.7e-08 62.4 248 27.4
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 5.7e-08 62.4 252 29.8
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 7.4e-08 62.0 80 50.0
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 9.7e-08 61.6 56 57.1
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 9.7e-08 61.6 235 30.2
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 9.7e-08 61.6 144 35.4
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 9.7e-08 61.6 90 47.8
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 9.7e-08 61.6 181 36.5
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 9.7e-08 61.6 104 41.3
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.3e-07 61.2 193 35.2
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 1.7e-07 60.8 75 52.0
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.7e-07 60.8 80 48.8
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 2.2e-07 60.5 180 32.8
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 2.8e-07 60.1 237 29.5
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 2.8e-07 60.1 56 57.1
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 2.8e-07 60.1 59 57.6
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.8e-07 60.1 238 29.8
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 3.7e-07 59.7 53 60.4
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 3.7e-07 59.7 53 60.4
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 3.7e-07 59.7 192 30.7
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.7e-07 59.7 250 30.0
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 4.8e-07 59.3 176 34.1
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 4.8e-07 59.3 55 54.5
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 6.3e-07 58.9 66 53.0
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 6.3e-07 58.9 66 53.0
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 6.3e-07 58.9 66 53.0
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 6.3e-07 58.9 53 60.4
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 6.3e-07 58.9 85 50.6
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 6.3e-07 58.9 186 34.4
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 6.3e-07 58.9 59 52.5
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 6.3e-07 58.9 59 52.5
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 8.2e-07 58.5 255 29.4
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 8.2e-07 58.5 78 51.3
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 8.2e-07 58.5 53 64.2
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 8.2e-07 58.5 206 30.6
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 8.2e-07 58.5 143 34.3
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 8.2e-07 58.5 141 34.0
CSS0033309 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 1.1e-06 58.2 165 32.7
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.1e-06 58.2 233 31.8
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.1e-06 58.2 56 55.4
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.1e-06 58.2 65 52.3
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 1.1e-06 58.2 189 33.3
Aa31LG2G7040 Aethionema arabicum HOM05D003787 ORTHO05D001736 1.4e-06 57.8 235 28.9
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 1.4e-06 57.8 126 38.9
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 1.4e-06 57.8 249 29.3
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 1.8e-06 57.4 77 51.9
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 1.8e-06 57.4 57 56.1
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.8e-06 57.4 133 34.6
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 1.8e-06 57.4 82 46.3
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 2.4e-06 57.0 59 52.5
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 3.1e-06 56.6 185 31.4
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 3.1e-06 56.6 57 54.4
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 3.1e-06 56.6 186 37.6
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 3.1e-06 56.6 255 31.8
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 4.1e-06 56.2 235 29.4
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 4.1e-06 56.2 108 38.9
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 4.1e-06 56.2 56 55.4
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.1e-06 56.2 80 43.8
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.1e-06 56.2 62 51.6
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 4.1e-06 56.2 51 58.8
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 5.3e-06 55.8 39 69.2
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 5.3e-06 55.8 245 28.6
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 5.3e-06 55.8 66 53.0
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 5.3e-06 55.8 179 30.7
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 5.3e-06 55.8 241 32.8
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 5.3e-06 55.8 133 33.8
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 7.0e-06 55.5 144 35.4
Lsat_1_v5_gn_4_111160 Lactuca sativa HOM05D006637 ORTHO05D001736 7.0e-06 55.5 46 60.9
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 7.0e-06 55.5 82 46.3
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 7.0e-06 55.5 185 30.8
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 9.1e-06 55.1 177 31.6
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 9.1e-06 55.1 190 31.6
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 9.1e-06 55.1 190 31.6
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 9.1e-06 55.1 166 36.1
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 9.1e-06 55.1 67 47.8


User provided reference genes

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