Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 3.4e-52 208.0 102 100.0
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 2.3e-48 195.3 105 92.4
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.4e-45 185.3 105 88.6
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 4.2e-42 174.5 106 84.9
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 4.2e-42 174.5 106 84.9
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.5e-28 128.3 105 66.7
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 9.5e-26 120.2 109 61.5
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 6.1e-25 117.5 109 60.6
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 8.0e-25 117.1 110 61.8
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 5.2e-24 114.4 110 57.3
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 3.4e-23 111.7 108 61.1
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 5.2e-16 87.8 81 59.3
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 2.9e-14 82.0 106 43.4
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 4.9e-14 81.3 98 45.9
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.8e-13 79.3 106 45.3
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.0e-13 77.4 59 59.3
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 7.0e-13 77.4 106 44.3
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.2e-13 77.0 55 61.8
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 9.2e-13 77.0 55 61.8
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.2e-12 76.6 92 46.7
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 2.7e-12 75.5 95 41.1
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.5e-12 75.1 111 43.2
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 6.0e-12 74.3 102 44.1
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.0e-11 73.6 106 37.7
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.0e-11 73.6 100 48.0
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.3e-11 73.2 110 43.6
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.7e-11 72.8 52 67.3
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 1.7e-11 72.8 60 55.0
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.7e-11 72.8 60 55.0
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.7e-11 72.8 58 56.9
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 2.3e-11 72.4 53 60.4
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.3e-11 72.4 60 53.3
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.3e-11 72.4 60 53.3
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.0e-11 72.0 52 59.6
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 3.0e-11 72.0 114 38.6
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 3.9e-11 71.6 98 41.8
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 3.9e-11 71.6 119 38.7
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 5.0e-11 71.2 111 39.6
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 6.6e-11 70.9 113 40.7
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 8.6e-11 70.5 102 46.1
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.5e-10 69.7 100 43.0
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.5e-10 69.7 120 37.5
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 1.5e-10 69.7 107 39.3
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.5e-10 69.7 53 60.4
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.9e-10 69.3 97 41.2
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.9e-10 69.3 108 44.4
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.9e-10 69.3 110 44.5
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.5e-10 68.9 116 37.1
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 2.5e-10 68.9 109 42.2
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 2.5e-10 68.9 104 43.3
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.3e-10 68.6 101 44.6
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.3e-10 68.6 61 54.1
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 3.3e-10 68.6 108 37.0
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.3e-10 68.6 66 51.5
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 3.3e-10 68.6 89 44.9
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 4.3e-10 68.2 66 51.5
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 4.3e-10 68.2 56 58.9
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.3e-10 68.2 103 40.8
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.3e-10 68.2 116 42.2
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 4.3e-10 68.2 67 50.7
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.6e-10 67.8 66 48.5
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 5.6e-10 67.8 107 41.1
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 7.3e-10 67.4 61 50.8
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 7.3e-10 67.4 117 41.9
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 7.3e-10 67.4 114 41.2
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.2e-09 66.6 104 38.5
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.2e-09 66.6 99 40.4
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 1.2e-09 66.6 111 40.5
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 1.2e-09 66.6 111 38.7
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.6e-09 66.2 122 36.9
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.6e-09 66.2 78 44.9
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.6e-09 66.2 108 37.0
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.6e-09 66.2 117 39.3
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.1e-09 65.9 115 38.3
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.1e-09 65.9 66 47.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.8e-09 65.5 88 43.2
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 2.8e-09 65.5 108 37.0
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.8e-09 65.5 118 38.1
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.8e-09 65.5 110 40.0
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.8e-09 65.5 100 38.0
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.8e-09 65.5 114 36.8
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 3.6e-09 65.1 56 57.1
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 3.6e-09 65.1 64 48.4
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 4.7e-09 64.7 62 50.0
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 4.7e-09 64.7 110 39.1
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 4.7e-09 64.7 79 46.8
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 4.7e-09 64.7 105 38.1
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 6.2e-09 64.3 124 37.9
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 6.2e-09 64.3 112 36.6
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 6.2e-09 64.3 116 34.5
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 8.0e-09 63.9 69 47.8
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 8.0e-09 63.9 69 47.8
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 8.0e-09 63.9 106 37.7
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 8.0e-09 63.9 112 34.8
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-08 63.5 115 38.3
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 1.4e-08 63.2 105 38.1
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.4e-08 63.2 71 47.9
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.8e-08 62.8 109 38.5
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.3e-08 62.4 109 38.5
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.0e-08 61.6 99 41.4
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 4.0e-08 61.6 105 37.1
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 5.2e-08 61.2 121 37.2
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 5.2e-08 61.2 89 43.8
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 5.2e-08 61.2 61 54.1
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 5.2e-08 61.2 117 37.6
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.9e-08 60.5 81 43.2
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 8.9e-08 60.5 47 57.4
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 8.9e-08 60.5 108 36.1
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.2e-07 60.1 59 49.2
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 1.5e-07 59.7 114 37.7
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.5e-07 59.7 91 38.5
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.5e-07 59.7 100 39.0
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.0e-07 59.3 62 48.4
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 3.4e-07 58.5 69 42.0
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 5.8e-07 57.8 111 36.9
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 5.8e-07 57.8 115 31.3
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.5e-07 57.4 114 36.0
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 7.5e-07 57.4 48 56.2
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 7.5e-07 57.4 116 36.2
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.8e-07 57.0 100 41.0
AL1G55880 Arabidopsis lyrata HOM05D012335 ORTHO05D014421 1.3e-06 56.6 91 39.6
CARHR039040 Cardamine hirsuta HOM05D012335 ORTHO05D014421 1.7e-06 56.2 60 43.3
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 1.7e-06 56.2 48 56.2
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.7e-06 56.2 105 35.2
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 2.2e-06 55.8 109 33.0
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 2.9e-06 55.5 60 48.3
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 3.7e-06 55.1 107 39.3
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 3.7e-06 55.1 106 38.7
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 4.9e-06 54.7 62 40.3
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 4.9e-06 54.7 99 40.4
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 6.4e-06 54.3 38 63.2


User provided reference genes

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