Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46795 Brassica carinata HOM05D007058 ORTHO05D009036 1.3e-143 513.1 256 100.0
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 2.3e-68 263.1 271 60.9
A07p39600 Brassica napus HOM05D007058 ORTHO05D009036 2.8e-58 229.6 259 56.4
BraA07t31509Z Brassica rapa HOM05D007058 ORTHO05D009036 2.8e-58 229.6 263 55.1
C06p47890 Brassica napus HOM05D007058 ORTHO05D009036 1.4e-54 217.2 259 55.6
BolC6t39824H Brassica oleracea HOM05D007058 ORTHO05D009036 1.4e-54 217.2 259 55.6
Thhalv10018574m.g Eutrema salsugineum HOM05D007058 ORTHO05D009036 1.5e-51 207.2 262 52.7
Sp5g28930 Schrenkiella parvula HOM05D007058 ORTHO05D009036 1.1e-49 201.1 263 51.0
CARHR066810 Cardamine hirsuta HOM05D007058 ORTHO05D009036 3.1e-49 199.5 261 51.0
AT1G73740 Arabidopsis thaliana HOM05D007058 ORTHO05D009036 9.9e-48 194.5 260 49.6
AL2G33550 Arabidopsis lyrata HOM05D007058 ORTHO05D009036 1.7e-47 193.7 261 48.7
Aa31LG4G4070 Aethionema arabicum HOM05D007058 ORTHO05D009036 1.5e-43 180.6 244 49.6
Carub.0002s2049 Capsella rubella HOM05D007058 ORTHO05D009036 5.3e-41 172.2 267 44.6
THA.LOC104813907 Tarenaya hassleriana HOM05D007058 ORTHO05D009036 1.7e-31 140.6 271 41.3
GSVIVG01008345001 Vitis vinifera HOM05D007058 ORTHO05D009036 5.7e-19 99.0 242 33.5
Hma1.2p1_2594F.1_g325085 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 1.3e-18 97.8 98 49.0
COL.COLO4_38517 Corchorus olitorius HOM05D007058 ORTHO05D009036 1.6e-18 97.4 252 33.3
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 4.8e-18 95.9 252 32.9
CANSAT80G0903 Cannabis sativa HOM05D007058 ORTHO05D009036 1.1e-17 94.7 84 52.4
Dinv12229 Davidia involucrata HOM05D007058 ORTHO05D009036 2.4e-17 93.6 243 30.5
FAN04G2101 Fragaria x ananassa HOM05D007058 ORTHO05D009036 3.1e-17 93.2 242 32.2
FAN08G1503 Fragaria x ananassa HOM05D007058 ORTHO05D009036 4.1e-17 92.8 242 32.2
Sc12g0007400 Simmondsia chinensis HOM05D007058 ORTHO05D009036 4.1e-17 92.8 98 51.0
Duzib205G0828 Durio zibethinus HOM05D007058 ORTHO05D009036 5.3e-17 92.4 79 55.7
Atru.chr9.916 Acer truncatum HOM05D007058 ORTHO05D009036 6.9e-17 92.0 266 33.5
TWI60G0394 Tripterygium wilfordii HOM05D007058 ORTHO05D009036 6.9e-17 92.0 240 33.3
FAN18G2897 Fragaria x ananassa HOM05D007058 ORTHO05D009036 9.0e-17 91.7 242 31.8
Hma1.2p1_1614F.1_g293670 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 1.2e-16 91.3 250 30.0
FvH4_5g16720 Fragaria vesca HOM05D007058 ORTHO05D009036 1.5e-16 90.9 255 31.8
Thecc.03G043100 Theobroma cacao HOM05D007058 ORTHO05D009036 1.5e-16 90.9 85 50.6
Ciclev10020201m.g Citrus clementina HOM05D007058 ORTHO05D009036 3.4e-16 89.7 241 31.5
Gohir.A07G059500 Gossypium hirsutum HOM05D007058 ORTHO05D009036 3.4e-16 89.7 240 32.9
FAN13G1457 Fragaria x ananassa HOM05D007058 ORTHO05D009036 4.5e-16 89.4 242 31.4
Actinidia02670 Actinidia chinensis HOM05D007058 ORTHO05D009036 5.9e-16 89.0 231 32.9
Nn3g17960 Nelumbo nucifera HOM05D007058 ORTHO05D009036 5.9e-16 89.0 84 54.8
QL10p026796 Quercus lobata HOM05D007058 ORTHO05D009036 5.9e-16 89.0 237 32.1
Haze_18744 Corylus avellana HOM05D007058 ORTHO05D009036 7.7e-16 88.6 214 33.6
Manes.01G015400 Manihot esculenta HOM05D007058 ORTHO05D009036 2.2e-15 87.0 244 30.7
Peaxi162Scf00683g00337 Petunia axillaris HOM05D007058 ORTHO05D009036 3.8e-15 86.3 97 47.4
PSO063G1254 Papaver somniferum HOM05D007058 ORTHO05D009036 5.0e-15 85.9 87 49.4
Gorai.001G067900 Gossypium raimondii HOM05D007058 ORTHO05D009036 8.5e-15 85.1 239 33.9
PSO782G5502 Papaver somniferum HOM05D007058 ORTHO05D009036 8.5e-15 85.1 87 48.3
ATR0681G321 Amborella trichopoda HOM05D007058 ORTHO05D009036 1.1e-14 84.7 97 48.5
EL10Ac5g11484 Beta vulgaris HOM05D007058 ORTHO05D009036 1.1e-14 84.7 97 43.3
PGR044G0638 Punica granatum HOM05D007058 ORTHO05D009036 1.1e-14 84.7 100 46.0
Eucgr.K02237 Eucalyptus grandis HOM05D007058 ORTHO05D009036 1.9e-14 84.0 79 50.6
Gohir.D07G064300 Gossypium hirsutum HOM05D007058 ORTHO05D009036 1.9e-14 84.0 243 32.1
Sed0017039 Sechium edule HOM05D007058 ORTHO05D009036 1.9e-14 84.0 80 51.2
arahy.Tifrunner.gnm1.ann1.8NC01M Arachis hypogaea HOM05D007058 ORTHO05D009036 2.5e-14 83.6 97 46.4
ClCG04G010870 Citrullus lanatus HOM05D007058 ORTHO05D009036 3.2e-14 83.2 80 51.2
Nitab4.5_0001456g0070 Nicotiana tabacum HOM05D007058 ORTHO05D009036 4.2e-14 82.8 97 46.4
Oeu017513.1 Olea europaea HOM05D007058 ORTHO05D009036 5.5e-14 82.4 78 55.1
Rhsim08G0129700 Rhododendron simsii HOM05D007058 ORTHO05D009036 5.5e-14 82.4 80 55.0
Cc04_g06820 Coffea canephora HOM05D007058 ORTHO05D009036 7.2e-14 82.0 84 50.0
TAR371G0970 Trochodendron aralioides HOM05D007058 ORTHO05D009036 9.4e-14 81.6 98 46.9
arahy.Tifrunner.gnm1.ann1.LC4GJT Arachis hypogaea HOM05D007058 ORTHO05D009036 1.2e-13 81.3 97 45.4
Nitab4.5_0006894g0050 Nicotiana tabacum HOM05D007058 ORTHO05D009036 1.2e-13 81.3 97 45.4
MD14G1230300 Malus domestica HOM05D007058 ORTHO05D009036 1.6e-13 80.9 254 30.3
Prupe.5G225300 Prunus persica HOM05D007058 ORTHO05D009036 1.6e-13 80.9 259 30.1
Sabra12G0037400 Salix brachista HOM05D007058 ORTHO05D009036 2.1e-13 80.5 78 47.4
TAR629G3445 Trochodendron aralioides HOM05D007058 ORTHO05D009036 2.1e-13 80.5 98 46.9
AUR62029919 Chenopodium quinoa HOM05D007058 ORTHO05D009036 4.6e-13 79.3 97 43.3
MD06G1220900 Malus domestica HOM05D007058 ORTHO05D009036 4.6e-13 79.3 239 30.5
MELO3C002112.2 Cucumis melo HOM05D007058 ORTHO05D009036 6.1e-13 79.0 80 47.5
MBI16_g25105_MAGBIO Magnolia biondii HOM05D007058 ORTHO05D009036 6.1e-13 79.0 245 29.4
CAN.G1129.46 Capsicum annuum HOM05D007058 ORTHO05D009036 7.9e-13 78.6 79 48.1
Aqoxy3G04055 Aquilegia oxysepala HOM05D007058 ORTHO05D009036 1.0e-12 78.2 236 30.1
AUR62033787 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.0e-12 78.2 97 43.3
Lj4g0007182 Lotus japonicus HOM05D007058 ORTHO05D009036 1.0e-12 78.2 90 47.8
TAR535G0005 Trochodendron aralioides HOM05D007058 ORTHO05D009036 1.0e-12 78.2 98 45.9
Lj9A424T33 Lonicera japonica HOM05D007058 ORTHO05D009036 1.4e-12 77.8 96 45.8
RcHm_v2.0_Chr7g0179381 Rosa chinensis HOM05D007058 ORTHO05D009036 1.8e-12 77.4 239 32.6
PGSC0003DMG400005667 Solanum tuberosum HOM05D007058 ORTHO05D009036 3.9e-12 76.3 97 43.3
Solyc03g118860.3 Solanum lycopersicum HOM05D007058 ORTHO05D009036 5.1e-12 75.9 97 43.3
Sopen03g037810 Solanum pennellii HOM05D007058 ORTHO05D009036 5.1e-12 75.9 97 43.3
Potri.012G053600 Populus trichocarpa HOM05D007058 ORTHO05D009036 8.8e-12 75.1 237 30.0
CsaV3_1G006960 Cucumis sativus L. HOM05D007058 ORTHO05D009036 2.0e-11 73.9 243 31.3
Hund02350 Selenicereus undatus HOM05D007058 ORTHO05D009036 4.3e-11 72.8 98 40.8
HPP92_023400 Vanilla planifolia HOM05D007058 ORTHO05D009036 4.3e-11 72.8 79 49.4
Glyma.05G242000 Glycine max HOM05D007058 ORTHO05D009036 8.2e-10 68.6 78 44.9
SMO308G0041 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 1.1e-09 68.2 97 42.3
Mapoly0014s0012 Marchantia polymorpha HOM05D007058 ORTHO05D009036 1.4e-09 67.8 107 38.3
Mapoly0014s0018 Marchantia polymorpha HOM05D007058 ORTHO05D009036 1.4e-09 67.8 107 38.3
SMO271G0182 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 1.4e-09 67.8 97 41.2
Glyma.08G049500 Glycine max HOM05D007058 ORTHO05D009036 6.9e-09 65.5 102 39.2
VMungo0251G0619 Vigna mungo HOM05D007058 ORTHO05D009036 9.1e-09 65.1 96 42.7
Migut.I00419 Erythranthe guttata HOM05D007058 ORTHO05D009036 1.5e-08 64.3 98 44.9
Zm00001eb132130 Zea mays HOM05D007058 ORTHO05D009036 2.0e-08 63.9 82 46.3
Phvul.002G325300 Phaseolus vulgaris HOM05D007058 ORTHO05D009036 1.7e-07 60.8 78 41.0
HPP92_017197 Vanilla planifolia HOM05D007058 ORTHO05D009036 2.2e-07 60.5 62 51.6
HPP92_027335 Vanilla planifolia HOM05D007058 ORTHO05D009036 2.2e-07 60.5 62 51.6
Os01g0516700 Oryza sativa ssp. japonica HOM05D007058 ORTHO05D009036 1.1e-06 58.2 222 29.3
arahy.Tifrunner.gnm1.ann1.4SU3WD Arachis hypogaea HOM05D007058 ORTHO05D009036 4.2e-06 56.2 76 39.5


User provided reference genes

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