Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-151 539.7 272 100.0
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 2.8e-64 249.6 280 57.1
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 4.1e-60 235.7 283 54.8
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 9.8e-54 214.5 289 50.9
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 2.1e-48 196.8 285 51.6
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.4e-47 194.1 287 48.4
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 3.4e-46 189.5 304 47.0
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 4.4e-46 189.1 282 47.2
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 2.9e-45 186.4 289 46.0
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 3.3e-41 172.9 289 45.3
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 4.7e-40 169.1 283 44.9
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.9e-36 157.1 128 70.3
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 7.3e-33 145.2 289 39.1
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.2e-29 133.7 284 37.7
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.2e-29 133.7 281 38.8
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 3.0e-26 123.2 302 37.4
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.3e-25 119.4 281 35.9
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 7.3e-25 118.6 299 38.1
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.3e-24 117.9 282 36.2
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 3.6e-24 116.3 301 35.5
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 4.8e-24 115.9 302 36.8
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.1e-23 114.8 281 37.0
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-23 114.8 133 58.6
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 1.8e-23 114.0 281 37.0
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 2.4e-23 113.6 290 36.9
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 4.0e-23 112.8 281 36.7
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 6.9e-23 112.1 210 41.9
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 1.2e-22 111.3 288 35.8
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 1.2e-22 111.3 281 36.3
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.5e-22 110.9 281 36.7
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 2.6e-22 110.2 119 58.8
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.6e-22 110.2 284 36.6
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 3.4e-22 109.8 282 35.1
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 5.8e-22 109.0 280 35.7
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 7.6e-22 108.6 280 33.9
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.7e-21 107.5 280 36.8
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.8e-21 106.3 128 57.8
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 6.4e-21 105.5 58 93.1
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 6.4e-21 105.5 58 93.1
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 6.4e-21 105.5 280 34.6
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 8.4e-21 105.1 282 35.5
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 8.4e-21 105.1 276 35.9
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 8.4e-21 105.1 292 34.2
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.1e-20 104.8 293 33.8
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.4e-20 104.4 277 36.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.4e-20 103.6 282 35.5
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 3.2e-20 103.2 281 37.7
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 5.4e-20 102.4 281 34.2
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 5.4e-20 102.4 280 33.6
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 7.1e-20 102.1 281 33.5
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 7.1e-20 102.1 280 33.6
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 2.7e-19 100.1 279 34.1
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 7.9e-19 98.6 293 34.5
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.3e-18 97.8 291 34.4
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.3e-18 97.1 280 33.2
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 2.3e-18 97.1 284 33.8
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 3.9e-18 96.3 291 33.7
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.1e-17 94.7 283 34.3
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.5e-17 94.4 283 33.9
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.9e-17 94.0 288 33.3
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 3.3e-17 93.2 285 34.7
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.3e-17 92.8 292 32.5
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.1e-16 90.5 278 32.7
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 4.8e-16 89.4 291 33.3
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 2.4e-15 87.0 277 30.7
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.0e-15 86.3 281 33.5
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 5.3e-15 85.9 217 36.4
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 5.3e-15 85.9 281 33.1
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.3e-13 81.3 282 34.4
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.9e-13 79.3 120 45.0
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.9e-13 79.3 283 31.1
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 8.4e-13 78.6 279 30.1
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.1e-12 78.2 125 47.2
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.9e-12 77.4 207 34.3
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 4.2e-12 76.3 71 60.6
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 4.2e-12 76.3 71 60.6
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 9.3e-12 75.1 275 33.5
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.2e-11 74.7 129 46.5
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.2e-11 74.7 114 46.5
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.6e-11 74.3 275 31.3
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.1e-11 73.9 273 29.7
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 3.5e-11 73.2 281 30.6
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.5e-11 73.2 119 48.7
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.0e-10 71.6 131 42.0
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 5.1e-10 69.3 125 46.4
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.7e-10 68.6 119 42.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 8.7e-10 68.6 196 33.7
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 1.9e-09 67.4 119 47.9
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.6e-09 65.9 181 38.1
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 9.6e-09 65.1 280 27.5
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.3e-08 64.7 72 54.2
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.3e-08 64.7 72 52.8
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 1.3e-08 64.7 128 42.2
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.6e-08 64.3 72 52.8
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.6e-08 64.3 137 40.9
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.6e-08 64.3 72 54.2
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.1e-08 63.9 145 37.9
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.1e-08 63.9 72 52.8
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.1e-08 63.9 72 52.8
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 2.1e-08 63.9 72 52.8
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.8e-08 63.5 72 51.4
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.8e-08 63.5 72 51.4
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 2.8e-08 63.5 72 51.4
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 3.7e-08 63.2 74 48.6
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.8e-08 62.8 277 28.2
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.8e-07 60.8 72 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 4.0e-07 59.7 279 28.3
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 4.0e-07 59.7 313 27.5
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 4.0e-07 59.7 69 50.7
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 5.3e-07 59.3 72 48.6
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 9.0e-07 58.5 51 60.8
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.5e-06 57.8 142 37.3
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.5e-06 57.8 53 54.7
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 3.4e-06 56.6 54 63.0
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 7.6e-06 55.5 51 56.9


User provided reference genes

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