Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46748 Brassica carinata HOM05D000535 ORTHO05D000427 1.2e-58 229.6 111 100.0
BolC6t39783H Brassica oleracea HOM05D000535 ORTHO05D000427 1.3e-57 226.1 111 99.1
BraA07t31473Z Brassica rapa HOM05D000535 ORTHO05D000427 3.4e-45 184.9 113 81.4
BcaB03g15044 Brassica carinata HOM05D000535 ORTHO05D000427 3.0e-41 171.8 113 76.1
C06p47430 Brassica napus HOM05D000535 ORTHO05D000427 2.2e-36 155.6 107 69.2
BcaC08g46747 Brassica carinata HOM05D000535 ORTHO05D000427 3.8e-36 154.8 107 69.2
BolC6t39781H Brassica oleracea HOM05D000535 ORTHO05D000427 4.9e-36 154.5 107 69.2
A07p39230 Brassica napus HOM05D000535 ORTHO05D000427 4.2e-35 151.4 107 68.2
BraA07t31471Z Brassica rapa HOM05D000535 ORTHO05D000427 2.3e-33 145.6 103 68.0
BcaB03g15040 Brassica carinata HOM05D000535 ORTHO05D000427 7.4e-32 140.6 111 61.3
C02p30960 Brassica napus HOM05D000535 ORTHO05D000427 2.4e-30 135.6 112 60.7
BolC6t39780H Brassica oleracea HOM05D000535 ORTHO05D000427 2.4e-30 135.6 111 60.4
BcaC08g46745 Brassica carinata HOM05D000535 ORTHO05D000427 3.1e-30 135.2 111 60.4
BolC2t09143H Brassica oleracea HOM05D000535 ORTHO05D000427 5.3e-30 134.4 112 60.7
BraA02t06900Z Brassica rapa HOM05D000535 ORTHO05D000427 6.9e-30 134.0 112 64.3
C06p47420 Brassica napus HOM05D000535 ORTHO05D000427 2.6e-29 132.1 111 59.5
BcaB07g33694 Brassica carinata HOM05D000535 ORTHO05D000427 4.5e-29 131.3 111 59.5
A02p18600 Brassica napus HOM05D000535 ORTHO05D000427 4.5e-29 131.3 112 63.4
BolC2t09133H Brassica oleracea HOM05D000535 ORTHO05D000427 4.5e-29 131.3 111 63.1
BcaB03g15042 Brassica carinata HOM05D000535 ORTHO05D000427 9.9e-29 130.2 114 58.8
A07p39220 Brassica napus HOM05D000535 ORTHO05D000427 2.9e-28 128.6 111 60.4
BraA07t31472Z Brassica rapa HOM05D000535 ORTHO05D000427 2.9e-28 128.6 111 60.4
BcaC04g22195 Brassica carinata HOM05D000535 ORTHO05D000427 1.9e-27 125.9 98 60.2
A07p39240 Brassica napus HOM05D000535 ORTHO05D000427 1.9e-27 125.9 113 61.1
BolC9t55136H Brassica oleracea HOM05D000535 ORTHO05D000427 1.9e-27 125.9 98 60.2
BraA09t37420Z Brassica rapa HOM05D000535 ORTHO05D000427 4.2e-27 124.8 98 59.2
BcaB03g15045 Brassica carinata HOM05D000535 ORTHO05D000427 5.5e-27 124.4 117 59.8
A02p18610 Brassica napus HOM05D000535 ORTHO05D000427 7.1e-27 124.0 112 58.9
C02p31000 Brassica napus HOM05D000535 ORTHO05D000427 7.1e-27 124.0 110 51.8
BcaB03g15046 Brassica carinata HOM05D000535 ORTHO05D000427 9.3e-27 123.6 117 59.0
BolC2t09148H Brassica oleracea HOM05D000535 ORTHO05D000427 9.3e-27 123.6 110 51.8
BolC2t09134H Brassica oleracea HOM05D000535 ORTHO05D000427 1.6e-26 122.9 114 60.5
C09p22220 Brassica napus HOM05D000535 ORTHO05D000427 2.7e-26 122.1 98 59.2
A09p17870 Brassica napus HOM05D000535 ORTHO05D000427 1.0e-25 120.2 102 57.8
A02p18650 Brassica napus HOM05D000535 ORTHO05D000427 1.8e-25 119.4 113 56.6
BraA02t06908Z Brassica rapa HOM05D000535 ORTHO05D000427 1.8e-25 119.4 113 56.6
BcaC08g46750 Brassica carinata HOM05D000535 ORTHO05D000427 3.0e-25 118.6 116 56.0
BolC2t09139H Brassica oleracea HOM05D000535 ORTHO05D000427 3.0e-25 118.6 113 55.8
C02p30970 Brassica napus HOM05D000535 ORTHO05D000427 3.9e-25 118.2 112 56.2
C02p30760 Brassica napus HOM05D000535 ORTHO05D000427 4.3e-24 114.8 112 57.1
C06p47450 Brassica napus HOM05D000535 ORTHO05D000427 9.6e-24 113.6 117 54.7
BolC6t39788H Brassica oleracea HOM05D000535 ORTHO05D000427 9.6e-24 113.6 117 54.7
BolC6t39785H Brassica oleracea HOM05D000535 ORTHO05D000427 1.3e-23 113.2 117 55.6
A02p18660 Brassica napus HOM05D000535 ORTHO05D000427 1.6e-23 112.8 106 52.8
BraA02t06909Z Brassica rapa HOM05D000535 ORTHO05D000427 1.6e-23 112.8 106 52.8
C06p47490 Brassica napus HOM05D000535 ORTHO05D000427 2.8e-23 112.1 117 53.8
A07p39270 Brassica napus HOM05D000535 ORTHO05D000427 8.2e-23 110.5 116 54.3
C02p30930 Brassica napus HOM05D000535 ORTHO05D000427 8.2e-23 110.5 102 53.9
BraA07t31474Z Brassica rapa HOM05D000535 ORTHO05D000427 8.2e-23 110.5 116 54.3
C02p30820 Brassica napus HOM05D000535 ORTHO05D000427 1.0e-20 103.6 92 57.6
AL2G33060 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 2.9e-20 102.1 112 51.8
C02p30890 Brassica napus HOM05D000535 ORTHO05D000427 2.9e-20 102.1 103 51.5
BolC2t09142H Brassica oleracea HOM05D000535 ORTHO05D000427 6.5e-20 100.9 109 46.8
BolC2t09147H Brassica oleracea HOM05D000535 ORTHO05D000427 1.4e-19 99.8 98 52.0
Sp5g28240 Schrenkiella parvula HOM05D000535 ORTHO05D000427 9.3e-19 97.1 110 48.2
BcaB03g12616 Brassica carinata HOM05D000535 ORTHO05D000427 1.2e-18 96.7 112 45.5
AT1G73260 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 2.7e-18 95.5 112 50.0
A02p18640 Brassica napus HOM05D000535 ORTHO05D000427 3.5e-18 95.1 95 49.5
Aa31LG4G3540 Aethionema arabicum HOM05D000535 ORTHO05D000427 6.0e-18 94.4 113 48.7
BcaC08g46753 Brassica carinata HOM05D000535 ORTHO05D000427 1.0e-17 93.6 90 52.2
BraA08t32905Z Brassica rapa HOM05D000535 ORTHO05D000427 1.0e-17 93.6 111 46.8
Carub.0002s2005 Capsella rubella HOM05D000535 ORTHO05D000427 1.0e-17 93.6 112 50.9
BcaC08g45656 Brassica carinata HOM05D000535 ORTHO05D000427 1.8e-17 92.8 112 50.9
C06p34120 Brassica napus HOM05D000535 ORTHO05D000427 1.8e-17 92.8 112 50.9
CARHR066280 Cardamine hirsuta HOM05D000535 ORTHO05D000427 1.8e-17 92.8 106 50.0
BcaB03g15038 Brassica carinata HOM05D000535 ORTHO05D000427 2.3e-17 92.4 107 50.5
Sp5g28230 Schrenkiella parvula HOM05D000535 ORTHO05D000427 1.5e-16 89.7 112 48.2
THA.LOC104811423 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 3.3e-16 88.6 113 45.1
BcaC08g45655 Brassica carinata HOM05D000535 ORTHO05D000427 4.3e-16 88.2 112 48.2
BraA07t30625Z Brassica rapa HOM05D000535 ORTHO05D000427 4.3e-16 88.2 109 48.6
BcaC08g46752 Brassica carinata HOM05D000535 ORTHO05D000427 7.4e-16 87.4 114 49.1
BolC6t39786H Brassica oleracea HOM05D000535 ORTHO05D000427 7.4e-16 87.4 114 49.1
BcaB03g15701 Brassica carinata HOM05D000535 ORTHO05D000427 9.7e-16 87.0 112 47.3
A07p29870 Brassica napus HOM05D000535 ORTHO05D000427 9.7e-16 87.0 110 48.2
Thhalv10019151m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 1.6e-15 86.3 111 47.7
Aa31LG4G3570 Aethionema arabicum HOM05D000535 ORTHO05D000427 2.8e-15 85.5 111 44.1
Aa31LG4G3560 Aethionema arabicum HOM05D000535 ORTHO05D000427 3.7e-15 85.1 110 41.8
BolC6t38525H Brassica oleracea HOM05D000535 ORTHO05D000427 4.8e-15 84.7 110 47.3
BcaB03g15702 Brassica carinata HOM05D000535 ORTHO05D000427 6.3e-15 84.3 110 48.2
C06p47400 Brassica napus HOM05D000535 ORTHO05D000427 8.2e-15 84.0 110 46.4
BraA07t31470Z Brassica rapa HOM05D000535 ORTHO05D000427 8.2e-15 84.0 110 46.4
A07p39210 Brassica napus HOM05D000535 ORTHO05D000427 1.1e-14 83.6 110 46.4
C06p34110 Brassica napus HOM05D000535 ORTHO05D000427 1.4e-14 83.2 110 46.4
CARHR066270 Cardamine hirsuta HOM05D000535 ORTHO05D000427 4.1e-14 81.6 114 43.9
BcaC08g45653 Brassica carinata HOM05D000535 ORTHO05D000427 5.3e-14 81.3 110 45.5
BcaB03g15704 Brassica carinata HOM05D000535 ORTHO05D000427 6.9e-14 80.9 110 45.5
BcaB03g15703 Brassica carinata HOM05D000535 ORTHO05D000427 2.0e-13 79.3 110 44.5
BcaB07g31187 Brassica carinata HOM05D000115 ORTHO05D000427 2.0e-13 79.3 67 53.7
C02p30950 Brassica napus HOM05D000535 ORTHO05D000427 3.4e-13 78.6 86 50.0
C06p47480 Brassica napus HOM05D000535 ORTHO05D000427 4.5e-13 78.2 103 46.6
A02p18680 Brassica napus HOM05D000535 ORTHO05D000427 1.0e-12 77.0 67 58.2
BolC2t09149H Brassica oleracea HOM05D000535 ORTHO05D000427 1.0e-12 77.0 67 58.2
BraA02t06910Z Brassica rapa HOM05D000535 ORTHO05D000427 1.0e-12 77.0 67 58.2
BraA02t06907Z Brassica rapa HOM05D000535 ORTHO05D000427 3.8e-12 75.1 68 52.9
C02p30880 Brassica napus HOM05D014798 ORTHO05D000427 1.1e-11 73.6 66 51.5
BcaC08g46744 Brassica carinata HOM05D000535 ORTHO05D000427 1.9e-11 72.8 110 45.5
Gohir.A05G392100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 6.1e-10 67.8 96 41.7
Gohir.D04G025000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 6.1e-10 67.8 96 41.7
Gorai.012G027600 Gossypium raimondii HOM05D000535 ORTHO05D000427 6.1e-10 67.8 96 41.7
Duzib128G1043 Durio zibethinus HOM05D000535 ORTHO05D000427 1.4e-09 66.6 96 38.5
BraA08t32904Z Brassica rapa HOM05D000535 ORTHO05D000427 2.3e-09 65.9 109 38.5
CSS0015346 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 3.9e-09 65.1 99 39.4
CSS0047130 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 3.9e-09 65.1 99 39.4
COL.COLO4_08721 Corchorus olitorius HOM05D000535 ORTHO05D000427 6.7e-09 64.3 96 38.5
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 8.8e-09 63.9 99 39.4
Atru.chr10.1140 Acer truncatum HOM05D000535 ORTHO05D000427 1.5e-08 63.2 97 35.1
Atru.chr10.1153 Acer truncatum HOM05D000535 ORTHO05D000427 1.5e-08 63.2 97 35.1
THA.LOC104813238 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 1.9e-08 62.8 113 31.0
Atru.chr10.1154 Acer truncatum HOM05D000535 ORTHO05D000427 3.3e-08 62.0 97 35.1
CSS0021540 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.7e-08 61.2 96 32.3
CSS0030185 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.7e-08 61.2 96 32.3
Thecc.05G197900 Theobroma cacao HOM05D000535 ORTHO05D000427 9.7e-08 60.5 96 39.6
arahy.Tifrunner.gnm1.ann1.6S81H9 Arachis hypogaea HOM05D000535 ORTHO05D000427 2.2e-07 59.3 98 37.8
CSS0003160 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.2e-07 59.3 101 35.6
COL.COLO4_08723 Corchorus olitorius HOM05D000535 ORTHO05D000427 2.2e-07 59.3 95 33.7
Lsat_1_v5_gn_3_3380 Lactuca sativa HOM05D000535 ORTHO05D000427 2.2e-07 59.3 95 32.6
Aqoxy1G02937 Aquilegia oxysepala HOM05D000535 ORTHO05D000427 2.8e-07 58.9 96 35.4
Sabra17G0126000 Salix brachista HOM05D000535 ORTHO05D000427 2.8e-07 58.9 96 34.4
CAN.G65.72 Capsicum annuum HOM05D000535 ORTHO05D000427 3.7e-07 58.5 95 32.6
HanXRQChr05g0161361 Helianthus annuus HOM05D000535 ORTHO05D000427 3.7e-07 58.5 96 36.5
TAR374G0418 Trochodendron aralioides HOM05D000535 ORTHO05D000427 3.7e-07 58.5 99 36.4
TAR374G0927 Trochodendron aralioides HOM05D000535 ORTHO05D000427 3.7e-07 58.5 99 36.4
ECA246G5188 Erigeron canadensis HOM05D000535 ORTHO05D000427 4.8e-07 58.2 95 33.7
GSVIVG01012936001 Vitis vinifera HOM05D000535 ORTHO05D000427 4.8e-07 58.2 98 37.8
CSS0038674 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 6.3e-07 57.8 95 30.5
BolC2t09141H Brassica oleracea HOM05D000535 ORTHO05D000427 8.2e-07 57.4 55 56.4
Ciclev10023257m.g Citrus clementina HOM05D000535 ORTHO05D000427 8.2e-07 57.4 99 38.4
EL10Ac6g13199 Beta vulgaris HOM05D000535 ORTHO05D000427 1.1e-06 57.0 95 36.8
BraA02t06901Z Brassica rapa HOM05D000535 ORTHO05D000427 1.1e-06 57.0 112 36.6
Ciclev10022276m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.1e-06 57.0 99 38.4
Ciclev10023465m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.1e-06 57.0 99 38.4
Ciclev10023572m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.1e-06 57.0 99 38.4
Ciclev10024584m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.1e-06 57.0 99 38.4
Lju170C15T10 Lonicera japonica HOM05D000535 ORTHO05D000427 1.1e-06 57.0 95 37.9
Ciclev10022282m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.4e-06 56.6 99 38.4
Ciclev10023320m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.4e-06 56.6 99 38.4
Ciclev10024528m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.4e-06 56.6 99 38.4
Hma1.2p1_0989F.1_g244870 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.4e-06 56.6 103 34.0
QL10p033926 Quercus lobata HOM05D000535 ORTHO05D000427 1.4e-06 56.6 96 36.5
SalBow5G3210 Salvia bowleyana HOM05D000535 ORTHO05D000427 1.8e-06 56.2 96 35.4
Sed0020580 Sechium edule HOM05D000535 ORTHO05D000427 1.8e-06 56.2 95 35.8
vmacro18605 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 1.8e-06 56.2 103 32.0
Potri.017G153400 Populus trichocarpa HOM05D000535 ORTHO05D000427 2.4e-06 55.8 96 34.4
SalBow5G1184 Salvia bowleyana HOM05D000535 ORTHO05D000427 2.4e-06 55.8 96 35.4
PGSC0003DMG400027053 Solanum tuberosum HOM05D000535 ORTHO05D000427 2.4e-06 55.8 95 37.9
ClCG01G014760 Citrullus lanatus HOM05D000535 ORTHO05D000427 3.1e-06 55.5 96 35.4
Ciclev10023371m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.1e-06 55.5 98 36.7
Ciclev10023581m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.1e-06 55.5 98 36.7
HanXRQChr06g0164771 Helianthus annuus HOM05D000535 ORTHO05D000427 3.1e-06 55.5 92 31.5
Prupe.5G074400 Prunus persica HOM05D000535 ORTHO05D000427 3.1e-06 55.5 96 34.4
PGSC0003DMG400027052 Solanum tuberosum HOM05D000535 ORTHO05D000427 3.1e-06 55.5 95 33.7
arahy.Tifrunner.gnm1.ann1.RZR4T8 Arachis hypogaea HOM05D000535 ORTHO05D000427 4.1e-06 55.1 95 32.6
CAN.G861.36 Capsicum annuum HOM05D000535 ORTHO05D000427 4.1e-06 55.1 95 34.7
Ciclev10021858m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.1e-06 55.1 98 35.7
Potri.017G153466 Populus trichocarpa HOM05D000535 ORTHO05D000427 4.1e-06 55.1 95 33.7
Potri.017G153600 Populus trichocarpa HOM05D000535 ORTHO05D000427 4.1e-06 55.1 95 33.7
Sabra04G0045300 Salix brachista HOM05D000535 ORTHO05D000427 4.1e-06 55.1 96 34.4
Rhsim08G0010100 Rhododendron simsii HOM05D000535 ORTHO05D000427 5.3e-06 54.7 96 30.2
Solyc06g072230.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 5.3e-06 54.7 95 33.7
Hma1.2p1_0807F.1_g221410 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 6.9e-06 54.3 105 36.2
vmacro18604 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 6.9e-06 54.3 96 32.3
arahy.Tifrunner.gnm1.ann1.4H9MWH Arachis hypogaea HOM05D000535 ORTHO05D000427 9.1e-06 53.9 95 32.6
Haze_18412 Corylus avellana HOM05D000535 ORTHO05D000427 9.1e-06 53.9 106 33.0
Nitab4.5_0000339g0140 Nicotiana tabacum HOM05D000535 ORTHO05D000427 9.1e-06 53.9 95 33.7
Solyc06g072220.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 9.1e-06 53.9 95 37.9
Sopen06g028540 Solanum pennellii HOM05D000535 ORTHO05D000427 9.1e-06 53.9 95 37.9
PGSC0003DMG400015219 Solanum tuberosum HOM05D000535 ORTHO05D000427 9.1e-06 53.9 95 33.7


User provided reference genes

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