Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 9.6e-162 573.5 312 100.0
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 8.4e-158 560.5 312 97.8
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 8.4e-158 560.5 312 97.8
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 7.6e-151 537.3 312 91.3
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 2.9e-150 535.4 334 86.2
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 2.9e-150 535.4 334 86.2
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 9.3e-141 503.8 312 85.9
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 8.7e-139 497.3 312 83.0
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 2.6e-135 485.7 313 81.2
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 1.3e-129 466.8 287 85.7
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 2.3e-123 446.0 316 75.9
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 9.1e-112 407.5 311 74.0
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 8.8e-107 391.0 254 81.9
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 3.1e-96 355.9 314 61.8
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 9.4e-93 344.4 307 59.6
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 4.7e-92 342.0 317 57.4
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.4e-91 340.5 306 58.8
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 1.4e-91 340.5 315 57.8
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 2.8e-89 332.8 306 58.8
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 2.4e-88 329.7 306 58.2
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 4.1e-88 328.9 196 86.7
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.6e-87 327.0 274 61.3
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.6e-87 327.0 306 56.2
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 5.9e-87 325.1 273 60.8
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 5.9e-87 325.1 309 57.0
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 1.7e-86 323.6 304 57.2
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.8e-86 322.4 295 58.0
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 6.5e-86 321.6 291 57.7
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 6.5e-86 321.6 287 57.8
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 8.5e-86 321.2 306 58.2
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 8.5e-86 321.2 276 58.3
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.5e-85 319.7 311 55.0
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 2.5e-85 319.7 310 59.4
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 5.5e-85 318.5 299 58.2
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 7.2e-85 318.2 271 61.6
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 9.5e-85 317.8 309 56.3
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 1.6e-84 317.0 268 61.9
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 4.7e-84 315.5 304 56.2
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 8.0e-84 314.7 309 54.0
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.0e-83 314.3 273 59.3
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.0e-83 314.3 309 54.0
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 1.0e-83 314.3 307 57.3
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.4e-83 313.9 298 58.4
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.8e-83 313.5 267 61.4
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.8e-83 313.5 270 59.6
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 2.3e-83 313.2 270 58.9
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 2.3e-83 313.2 308 55.5
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 3.0e-83 312.8 268 58.6
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 5.2e-83 312.0 269 59.5
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 8.8e-83 311.2 273 59.0
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.2e-82 310.8 268 58.6
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.5e-82 310.5 268 58.6
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 2.0e-82 310.1 262 60.3
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 5.7e-82 308.5 275 60.0
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 7.5e-82 308.1 262 61.1
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 9.8e-82 307.8 270 58.9
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.3e-81 307.4 256 60.2
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 1.7e-81 307.0 275 57.5
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 1.7e-81 307.0 269 57.6
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 2.8e-81 306.2 312 53.8
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 1.1e-80 304.3 259 59.8
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 5.4e-80 302.0 288 56.2
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 9.2e-80 301.2 285 58.6
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 9.2e-80 301.2 270 60.0
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 3.5e-79 299.3 280 55.7
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 4.5e-79 298.9 361 46.5
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.9e-79 298.5 261 57.9
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 1.0e-78 297.7 262 58.4
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.7e-78 297.0 248 61.7
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 2.3e-78 296.6 253 59.3
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 2.9e-78 296.2 268 58.2
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.1e-77 294.3 302 54.0
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.5e-77 293.9 279 55.2
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.1e-76 290.0 257 57.2
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 3.6e-76 289.3 268 55.6
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 1.4e-75 287.3 356 47.5
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.8e-75 287.0 253 58.9
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.2e-74 284.3 268 55.2
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 1.2e-74 284.3 306 50.0
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 4.9e-73 278.9 324 48.8
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.1e-72 277.7 269 54.3
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 7.0e-72 275.0 276 53.6
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.6e-71 273.9 315 48.9
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 7.8e-71 271.6 309 49.8
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 1.0e-70 271.2 274 52.6
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.7e-70 270.4 245 57.1
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 1.5e-66 257.3 311 49.2
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.9e-64 250.4 286 46.5
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.2e-63 247.7 309 46.6
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 3.5e-63 246.1 309 46.3
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 3.6e-60 236.1 196 60.2
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.1e-59 234.6 193 62.2
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 1.3e-57 227.6 209 56.0
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 4.1e-56 222.6 280 46.1
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.1e-55 220.3 170 65.9
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 2.8e-52 209.9 322 41.6
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 3.9e-46 189.5 202 49.5
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 8.6e-46 188.3 215 52.6
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.6e-44 184.1 156 57.7
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.1e-43 181.4 167 57.5
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 7.6e-42 175.3 261 40.2
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.2e-34 151.4 136 54.4
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 1.5e-34 151.0 151 54.3
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.4e-32 144.4 179 52.5
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.0e-18 97.4 189 34.4
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.4e-16 91.3 282 31.6
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.1e-13 81.6 277 29.6
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 6.9e-11 72.4 102 40.2
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 3.8e-09 66.6 52 63.5
C02p30170 Brassica napus HOM05D006979 ORTHO05D033722 5.0e-09 66.2 52 67.3
BolC2t09067H Brassica oleracea HOM05D006979 ORTHO05D033722 5.0e-09 66.2 52 67.3
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 4.2e-08 63.2 52 59.6
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 9.3e-08 62.0 121 31.4
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 9.3e-08 62.0 241 28.2
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 5.1e-06 56.2 231 26.4


User provided reference genes

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