Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 9.3e-116 420.2 214 100.0
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 9.3e-116 420.2 214 100.0
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 9.3e-116 420.2 214 100.0
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 6.2e-112 407.5 214 97.2
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 6.2e-112 407.5 214 97.2
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 5.0e-69 265.0 216 68.1
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 5.0e-69 265.0 216 68.1
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 5.0e-69 265.0 216 68.1
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 1.9e-68 263.1 215 67.0
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 1.6e-67 260.0 215 66.0
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 4.7e-67 258.5 215 65.6
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 1.9e-52 209.9 211 58.8
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 1.9e-52 209.9 211 58.8
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 2.8e-48 196.1 216 55.1
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 1.6e-46 190.3 215 52.1
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 5.9e-46 188.3 216 53.7
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-45 186.4 226 51.8
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-42 177.6 224 48.7
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 1.0e-42 177.6 224 48.7
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 4.0e-42 175.6 216 49.1
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 8.9e-42 174.5 224 48.2
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 5.7e-41 171.8 218 50.0
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 7.5e-41 171.4 216 49.1
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 7.5e-41 171.4 216 49.1
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 1.7e-40 170.2 214 48.6
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 3.7e-40 169.1 217 50.7
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 8.3e-40 167.9 214 48.1
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-39 167.2 217 48.8
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-39 167.2 217 48.8
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-39 167.2 214 48.1
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-39 167.2 215 47.9
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-39 167.2 214 48.1
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 1.4e-39 167.2 215 47.9
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 1.8e-39 166.8 216 48.1
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 2.4e-39 166.4 217 47.0
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-39 166.0 222 47.7
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 3.2e-39 166.0 222 47.7
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 7.0e-39 164.9 217 47.5
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 7.0e-39 164.9 216 48.1
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 1.6e-38 163.7 218 50.0
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-38 163.3 214 46.7
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 3.5e-38 162.5 215 47.0
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 1.0e-37 161.0 215 46.0
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.0e-37 161.0 216 45.4
BcaC08g46681 Brassica carinata HOM05D007344 ORTHO05D032082 1.7e-37 160.2 144 63.2
C06p46580 Brassica napus HOM05D007344 ORTHO05D032082 1.7e-37 160.2 144 63.2
BolC6t39703H Brassica oleracea HOM05D007344 ORTHO05D032082 1.7e-37 160.2 144 63.2
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 1.7e-37 160.2 220 48.2
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.8e-35 152.9 214 44.9
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 6.2e-35 151.8 206 46.1
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 1.4e-34 150.6 206 43.2
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 1.4e-34 150.6 206 43.2
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 8.9e-34 147.9 206 46.1
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 1.2e-33 147.5 209 45.5
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 3.4e-33 146.0 209 44.5
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 4.4e-33 145.6 204 43.6
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 7.5e-33 144.8 209 45.0
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 7.5e-33 144.8 209 45.0
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-32 144.1 214 43.9
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-32 144.1 214 43.9
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 3.2e-31 139.4 218 42.7
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 4.6e-30 135.6 219 46.6
CARHR065160 Cardamine hirsuta HOM05D007344 ORTHO05D009010 4.6e-30 135.6 211 46.0
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 1.0e-29 134.4 166 48.8
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 4.7e-27 125.6 218 42.2
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 4.0e-26 122.5 206 42.2
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 4.0e-26 122.5 184 44.0
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 1.9e-23 113.6 214 40.2
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-21 106.7 174 40.8
C02p29790 Brassica napus HOM05D007344 ORTHO05D009010 2.1e-19 100.1 117 49.6
BcaC03g15367 Brassica carinata HOM05D007344 ORTHO05D009010 8.1e-19 98.2 117 49.6
BcaC08g46684 Brassica carinata HOM05D007344 ORTHO05D032659 6.8e-18 95.1 204 38.7
C06p46640 Brassica napus HOM05D007344 ORTHO05D032659 6.8e-18 95.1 204 38.7
BolC6t39709H Brassica oleracea HOM05D007344 ORTHO05D032659 6.8e-18 95.1 204 38.7
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 8.9e-18 94.7 216 35.2
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 1.1e-15 87.8 101 51.5
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-15 86.3 210 36.2
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 3.2e-15 86.3 209 34.0
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 4.1e-15 85.9 209 34.0
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 5.4e-15 85.5 220 34.5
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 5.4e-15 85.5 210 35.7
BolC6t39694H Brassica oleracea HOM05D007344 ORTHO05D009010 7.1e-15 85.1 221 33.0
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 9.2e-15 84.7 201 34.3
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 3.9e-13 79.3 212 33.5
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.2e-11 74.3 159 35.8
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 2.8e-11 73.2 189 31.7
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 2.8e-11 73.2 189 31.7
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 1.1e-10 71.2 190 31.6
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 2.4e-10 70.1 191 31.9
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 2.4e-10 70.1 191 31.9
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 3.1e-10 69.7 161 36.0
BcaC08g46675 Brassica carinata HOM05D007344 ORTHO05D009010 5.2e-10 68.9 82 47.6
C06p46510 Brassica napus HOM05D007344 ORTHO05D009010 5.2e-10 68.9 82 47.6
A07p38390 Brassica napus HOM05D007344 ORTHO05D009010 2.0e-09 67.0 209 29.2
C06p46470 Brassica napus HOM05D007344 ORTHO05D009010 3.4e-09 66.2 212 31.1
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 9.9e-09 64.7 221 31.7
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.3e-08 64.3 223 30.5
MELO3C002177.2 Cucumis melo HOM05D000535 ORTHO05D000427 1.7e-08 63.9 174 31.0
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 2.2e-08 63.5 219 27.9
BcaC08g46680 Brassica carinata HOM05D007344 ORTHO05D009010 2.2e-08 63.5 65 56.9
C06p46560 Brassica napus HOM05D007344 ORTHO05D041415 2.2e-08 63.5 65 56.9
BolC6t39701H Brassica oleracea HOM05D007344 ORTHO05D041415 2.2e-08 63.5 65 56.9
Gohir.A10G215016 Gossypium hirsutum HOM05D000535 ORTHO05D000427 4.9e-08 62.4 143 28.0
MELO3C002176.2 Cucumis melo HOM05D000535 ORTHO05D000427 2.4e-07 60.1 168 29.2
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 5.4e-07 58.9 137 31.4
Aa31LG4G3590 Aethionema arabicum HOM05D000535 ORTHO05D009010 2.7e-06 56.6 203 31.0
Gohir.A10G215000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 2.7e-06 56.6 153 28.1
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 3.5e-06 56.2 137 30.7
Cc00_g28690 Coffea canephora HOM05D000535 ORTHO05D000427 3.5e-06 56.2 137 29.9
Cc00_g34040 Coffea canephora HOM05D000535 ORTHO05D000427 3.5e-06 56.2 137 29.9
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 4.6e-06 55.8 157 29.9
CSS0021540 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 6.0e-06 55.5 153 28.8
CSS0003160 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 7.8e-06 55.1 163 28.8
Thhalv10019129m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 7.8e-06 55.1 195 28.7


User provided reference genes

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