Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.0e-45 186.4 97 100.0
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.0e-45 186.4 97 100.0
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.0e-45 186.4 97 100.0
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 2.3e-45 185.3 97 97.9
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 2.3e-45 185.3 97 97.9
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 3.0e-45 184.9 97 97.9
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 3.0e-45 184.9 97 97.9
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 3.0e-45 184.9 97 96.9
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 3.0e-45 184.9 97 99.0
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-44 182.6 97 95.9
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.5e-44 181.8 97 94.8
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 2.5e-44 181.8 97 95.9
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 3.3e-44 181.4 97 94.8
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 4.3e-44 181.0 97 95.9
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 4.3e-44 181.0 97 95.9
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 4.3e-44 181.0 97 95.9
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 4.3e-44 181.0 97 95.9
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 4.3e-44 181.0 97 95.9
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 5.6e-44 180.6 97 94.8
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 1.6e-43 179.1 97 92.8
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 2.8e-43 178.3 97 93.8
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 2.8e-43 178.3 97 93.8
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 1.1e-42 176.4 98 92.9
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-42 176.0 98 92.9
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.8e-42 175.6 97 91.8
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 5.2e-42 174.1 98 91.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.9e-39 165.6 97 83.5
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 3.5e-38 161.4 97 81.4
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 7.8e-38 160.2 98 88.8
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 5.1e-37 157.5 97 79.4
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 6.6e-37 157.1 97 82.5
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 8.7e-37 156.8 98 85.7
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 1.5e-36 156.0 97 79.4
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 1.9e-36 155.6 97 81.4
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 3.3e-36 154.8 97 80.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 5.6e-36 154.1 97 77.3
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 5.6e-36 154.1 97 77.3
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 5.6e-36 154.1 97 78.4
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.6e-35 152.5 97 80.4
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 2.8e-35 151.8 97 79.4
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.1e-34 149.8 97 78.4
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 78.4
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 4.0e-34 147.9 97 76.3
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 4.0e-34 147.9 100 76.0
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 5.3e-34 147.5 97 74.2
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 9.0e-34 146.7 100 75.0
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.5e-33 146.0 98 78.6
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 75.5
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 3.4e-33 144.8 100 74.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.4e-33 144.8 97 72.2
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 4.5e-33 144.4 99 72.7
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 5.8e-33 144.1 97 74.2
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.6e-33 143.7 97 71.1
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.6e-33 143.7 97 71.1
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 70.1
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 70.1
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 1.7e-32 142.5 100 75.0
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 2.2e-32 142.1 100 75.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 2.9e-32 141.7 100 74.0
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 6.4e-32 140.6 99 75.8
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 8.4e-32 140.2 100 75.0
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 8.4e-32 140.2 104 72.1
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 8.4e-32 140.2 98 75.5
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 8.4e-32 140.2 99 71.7
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 1.1e-31 139.8 103 72.8
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.4e-31 139.4 98 74.5
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.4e-31 139.4 98 74.5
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 98 73.5
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 1.9e-31 139.0 98 71.4
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 1.9e-31 139.0 100 72.0
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.9e-31 139.0 97 68.0
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.4e-31 138.7 98 73.5
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 2.4e-31 138.7 97 72.2
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.2e-31 138.3 100 73.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.2e-31 138.3 100 73.0
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.2e-31 138.3 97 74.2
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.2e-31 138.3 97 75.3
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 4.2e-31 137.9 97 73.2
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 4.2e-31 137.9 96 68.8
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 5.4e-31 137.5 98 70.4
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 7.1e-31 137.1 98 74.5
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.2e-30 136.3 98 72.4
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 1.2e-30 136.3 98 70.4
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 1.2e-30 136.3 121 61.2
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 1.6e-30 136.0 97 70.1
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 72.7
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 72.7
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 2.1e-30 135.6 98 70.4
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.1e-30 135.6 98 70.4
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.1e-30 135.6 98 70.4
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.6e-30 134.4 100 70.0
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 4.6e-30 134.4 100 73.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 7.9e-30 133.7 99 67.7
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.3e-29 132.9 98 72.4
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 1.8e-29 132.5 98 69.4
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 1.8e-29 132.5 98 68.4
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.8e-29 132.5 101 70.3
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.3e-29 132.1 100 71.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.3e-29 132.1 100 71.0
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 70.7
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.0e-29 131.7 98 69.4
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 3.0e-29 131.7 98 69.4
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 5.1e-29 131.0 101 68.3
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 8.7e-29 130.2 99 69.7
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 1.1e-28 129.8 98 66.3
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 1.9e-28 129.0 98 69.4
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 3.3e-28 128.3 100 70.0
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 4.3e-28 127.9 96 70.8
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 4.3e-28 127.9 98 72.4
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 4.3e-28 127.9 98 66.3
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 9.6e-28 126.7 97 69.1
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 2.1e-27 125.6 95 66.3
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.8e-27 125.2 89 69.7
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 3.7e-27 124.8 97 67.0
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 6.2e-27 124.0 74 78.4
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 6.2e-27 124.0 98 68.4
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 8.1e-27 123.6 104 68.3
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.1e-26 123.2 100 67.0
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.4e-26 122.9 97 63.9
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.4e-26 122.9 97 63.9
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 1.8e-26 122.5 97 66.0
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.4e-26 122.1 74 77.0
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 3.1e-26 121.7 97 67.0
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 4.0e-26 121.3 102 67.6
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 5.3e-26 120.9 99 66.7
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.3e-26 120.9 74 77.0
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.3e-26 120.9 74 77.0
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.3e-26 120.9 74 77.0
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 9.0e-26 120.2 97 61.9
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 9.0e-26 120.2 108 63.9
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.2e-25 119.8 98 66.3
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.5e-25 119.4 97 61.9
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 2.0e-25 119.0 97 63.9
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 4.5e-25 117.9 89 68.5
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 4.5e-25 117.9 89 66.3
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 5.8e-25 117.5 87 70.1
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 5.8e-25 117.5 87 66.7
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 9.9e-25 116.7 95 61.1
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.3e-24 116.3 124 56.5
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.3e-24 116.3 77 74.0
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 6.4e-24 114.0 99 60.6
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 1.4e-23 112.8 70 80.0
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 1.4e-23 112.8 96 62.5
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 4.2e-23 111.3 107 57.0
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 7.1e-23 110.5 82 70.7
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.6e-22 109.4 85 64.7
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 2.7e-22 108.6 96 57.3
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.7e-21 103.6 57 86.0
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 8.7e-21 103.6 61 75.4
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 3.7e-19 98.2 92 54.3
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.2e-17 93.2 64 67.2
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 6.3e-11 70.9 89 43.8
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 1.8e-10 69.3 74 45.9
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 2.4e-10 68.9 70 52.9
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 1.3e-08 63.2 52 61.5


User provided reference genes

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