Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.7e-149 532.3 287 100.0
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.0e-145 520.4 287 93.4
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 6.8e-145 517.7 287 92.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 6.8e-145 517.7 285 93.3
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 6.3e-143 511.1 285 92.6
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.9e-135 485.7 287 92.0
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.3e-123 445.3 283 84.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 6.4e-119 431.4 286 81.8
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 7.1e-118 427.9 286 81.1
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.0e-116 422.5 294 79.3
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.9e-115 419.9 284 81.0
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.1e-106 389.8 284 76.4
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 9.3e-94 347.8 303 67.3
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 8.7e-76 288.1 296 58.4
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.1e-73 279.6 297 57.9
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.1e-73 279.3 289 57.1
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.0e-72 276.9 297 56.6
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.6e-72 276.6 287 55.4
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.7e-72 275.0 292 53.4
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 7.7e-72 275.0 297 59.9
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.2e-71 273.5 295 54.9
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.2e-71 273.5 295 54.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.0e-71 272.3 287 54.7
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.5e-71 271.9 292 53.4
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 8.5e-71 271.6 297 54.2
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.2e-70 269.6 287 54.0
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.2e-70 269.6 287 54.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 7.2e-70 268.5 284 54.9
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.2e-69 267.7 290 56.6
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.6e-69 267.3 287 54.4
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 2.1e-69 266.9 295 55.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.1e-69 266.9 291 54.3
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.6e-69 265.8 288 53.5
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.1e-69 265.4 287 54.0
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.8e-68 263.8 286 54.2
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.8e-68 263.8 287 54.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.0e-68 263.1 289 53.3
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.0e-68 263.1 296 54.4
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 3.9e-68 262.7 296 53.4
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.9e-68 262.7 300 52.7
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 5.1e-68 262.3 303 52.5
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.1e-67 261.2 288 54.9
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.5e-67 260.0 300 53.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.5e-67 260.0 282 53.9
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 2.5e-67 260.0 286 51.7
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.3e-66 257.7 288 52.4
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.7e-66 257.3 293 51.2
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.8e-66 256.5 288 53.1
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.8e-66 256.5 285 53.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 8.2e-66 255.0 289 55.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.4e-65 253.4 276 53.6
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.3e-65 252.3 290 53.1
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 9.1e-65 251.5 304 52.3
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.5e-64 250.8 286 51.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.0e-64 250.4 285 52.3
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 5.9e-64 248.8 288 52.1
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.2e-63 246.9 296 53.7
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.9e-63 246.5 294 52.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 6.5e-63 245.4 294 56.8
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 4.2e-62 242.7 290 55.9
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 5.5e-62 242.3 288 50.7
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.6e-61 240.7 303 51.5
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.7e-61 240.0 298 49.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.9e-61 238.4 288 53.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.3e-60 236.9 298 50.0
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.0e-59 233.8 294 53.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.3e-59 233.0 294 50.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.4e-59 232.6 295 52.5
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 4.4e-59 232.6 296 51.4
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.4e-59 232.6 289 51.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.7e-59 232.3 294 49.3
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 7.4e-59 231.9 299 48.8
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 9.7e-59 231.5 294 49.7
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.8e-58 229.9 298 48.0
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.7e-58 229.6 336 45.8
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.7e-58 229.6 336 45.8
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 6.3e-58 228.8 295 47.5
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 6.3e-58 228.8 274 52.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-57 228.0 294 49.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 2.4e-57 226.9 308 48.1
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 4.1e-57 226.1 302 49.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 4.1e-57 226.1 292 49.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 7.0e-57 225.3 330 46.7
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.5e-56 223.0 241 55.2
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 4.5e-56 222.6 295 48.5
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.5e-56 222.6 303 51.5
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.9e-56 222.2 284 50.4
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.0e-55 221.5 290 47.9
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.7e-55 220.7 289 52.6
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.2e-55 220.3 288 49.3
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.2e-55 220.3 290 48.6
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 2.5e-54 216.9 308 47.7
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 4.2e-54 216.1 288 48.6
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 9.4e-54 214.9 305 46.6
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.2e-53 214.5 297 51.5
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.7e-53 213.4 300 48.7
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.0e-52 211.5 291 47.8
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.8e-52 210.7 290 48.6
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.8e-52 210.7 296 53.0
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.8e-52 210.7 317 43.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 3.0e-52 209.9 298 48.0
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.0e-52 209.9 277 48.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.0e-52 209.5 289 49.8
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 5.2e-52 209.1 292 49.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.2e-52 209.1 297 45.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.1e-51 208.0 312 45.2
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.3e-51 206.5 273 52.4
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.3e-50 204.5 297 45.8
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.8e-50 203.4 244 51.2
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.8e-50 202.6 210 55.2
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.8e-49 200.7 166 62.7
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.1e-49 199.9 216 53.2
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.3e-49 199.1 216 53.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 9.1e-49 198.4 318 45.0
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.6e-48 197.6 303 46.2
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.5e-48 196.1 293 45.4
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.9e-48 195.7 216 52.3
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.0e-47 194.9 285 45.6
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.2e-47 193.7 256 49.6
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.9e-47 193.4 297 44.8
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.0e-47 192.6 274 49.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.1e-46 191.4 292 44.2
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.5e-46 191.0 168 61.3
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.1e-45 187.2 279 45.9
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 4.7e-45 186.0 299 44.5
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 4.7e-45 186.0 298 43.3
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 3.0e-44 183.3 266 51.1
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 5.2e-44 182.6 291 47.1
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.2e-43 181.4 122 71.3
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.4e-43 179.9 345 40.0
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 5.7e-43 179.1 125 73.6
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.4e-41 173.7 286 42.3
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.4e-41 173.7 287 40.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.1e-41 173.3 183 52.5
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.6e-40 171.0 167 55.7
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.5e-38 164.5 292 39.7
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.5e-38 164.5 180 57.8
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 5.5e-38 162.5 302 39.4
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.6e-37 161.0 116 65.5
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.6e-37 161.0 116 65.5
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.6e-37 161.0 116 70.7
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.0e-36 156.4 166 53.0
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.2e-35 154.8 291 39.9
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.3e-34 149.1 282 39.4
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.1e-33 146.7 280 37.1
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.4e-33 146.0 290 37.9
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 5.4e-33 146.0 116 62.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-32 144.8 116 62.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.1e-29 134.0 154 47.4
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.8e-29 133.7 182 48.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 4.4e-27 126.3 125 53.6
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.7e-23 114.4 121 44.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.3e-22 109.8 77 66.2
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 6.4e-10 69.3 127 45.7
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.0e-07 60.5 55 50.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.3e-06 55.8 48 47.9


User provided reference genes

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