Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46505 Brassica carinata HOM05D001017 ORTHO05D032137 2.2e-67 258.8 130 100.0
BcaC01g05653 Brassica carinata HOM05D001017 ORTHO05D001025 3.1e-13 79.0 80 58.8
A05p03090 Brassica napus HOM05D011886 ORTHO05D032137 4.0e-13 78.6 106 50.0
A07p23620 Brassica napus HOM05D011886 ORTHO05D032137 4.0e-13 78.6 106 50.0
Carub.0005s1944 Capsella rubella HOM05D001017 ORTHO05D001025 3.2e-10 68.9 109 43.1
CARHR130820 Cardamine hirsuta HOM05D001017 ORTHO05D001025 3.2e-10 68.9 109 43.1
CARHR162840 Cardamine hirsuta HOM05D001017 ORTHO05D001025 3.2e-10 68.9 109 43.1
Sp4g18820 Schrenkiella parvula HOM05D001017 ORTHO05D001025 3.2e-10 68.9 109 43.1
AL4G32710 Arabidopsis lyrata HOM05D001017 ORTHO05D001025 5.4e-10 68.2 109 43.1
A03p20180 Brassica napus HOM05D001017 ORTHO05D001025 5.4e-10 68.2 109 43.1
C03p23630 Brassica napus HOM05D001017 ORTHO05D001025 5.4e-10 68.2 109 43.1
BolC3t14758H Brassica oleracea HOM05D001017 ORTHO05D001025 5.4e-10 68.2 109 43.1
BraA03t11268Z Brassica rapa HOM05D001017 ORTHO05D001025 5.4e-10 68.2 109 43.1
BcaB06g28952 Brassica carinata HOM05D001017 ORTHO05D001025 9.3e-10 67.4 108 42.6
BcaB01g03831 Brassica carinata HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
BcaB02g09348 Brassica carinata HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
BcaB06g28950 Brassica carinata HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
BcaC02g11771 Brassica carinata HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
A04p28030 Brassica napus HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
A05p09270 Brassica napus HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
C04p11570 Brassica napus HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
C04p65430 Brassica napus HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
BolC4t22805H Brassica oleracea HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
BolC4t28032H Brassica oleracea HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
BraA04t18290Z Brassica rapa HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
BraA05t19884Z Brassica rapa HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
Carub.0004s1833 Capsella rubella HOM05D001017 ORTHO05D001025 1.2e-09 67.0 109 42.2
AL5G33760 Arabidopsis lyrata HOM05D001017 ORTHO05D001025 1.6e-09 66.6 109 42.2
AT2G36530 Arabidopsis thaliana HOM05D001017 ORTHO05D001025 1.6e-09 66.6 109 41.3
Thhalv10010379m.g Eutrema salsugineum HOM05D001017 ORTHO05D001025 1.6e-09 66.6 109 41.3
Aa31LG5G21750 Aethionema arabicum HOM05D001017 ORTHO05D001025 4.6e-09 65.1 41 80.5
THA.LOC104805113 Tarenaya hassleriana HOM05D001017 ORTHO05D001025 4.6e-09 65.1 109 41.3
BcaB01g00326 Brassica carinata HOM05D001017 ORTHO05D001025 6.0e-09 64.7 109 40.4
BolC8t50432H Brassica oleracea HOM05D001017 ORTHO05D001025 6.0e-09 64.7 109 40.4
BcaC07g39657 Brassica carinata HOM05D001017 ORTHO05D001025 7.8e-09 64.3 109 40.4
C08p28200 Brassica napus HOM05D001017 ORTHO05D001025 7.8e-09 64.3 109 40.4
THA.LOC104827486 Tarenaya hassleriana HOM05D001017 ORTHO05D001025 7.8e-09 64.3 109 42.2
BcaC02g07586 Brassica carinata HOM05D001017 ORTHO05D001025 1.0e-08 63.9 41 78.0
Thhalv10010378m.g Eutrema salsugineum HOM05D001017 ORTHO05D001025 1.7e-08 63.2 109 40.4
Sp5g09370 Schrenkiella parvula HOM05D001017 ORTHO05D001025 3.0e-08 62.4 41 75.6
GSVIVG01033770001 Vitis vinifera HOM05D001017 ORTHO05D001025 3.0e-08 62.4 44 77.3
Gohir.A01G209600 Gossypium hirsutum HOM05D001017 ORTHO05D001025 6.6e-08 61.2 41 73.2
Gohir.D01G198700 Gossypium hirsutum HOM05D001017 ORTHO05D001025 6.6e-08 61.2 41 73.2
Gorai.002G243100 Gossypium raimondii HOM05D001017 ORTHO05D001025 6.6e-08 61.2 41 73.2
Duzib093G1966 Durio zibethinus HOM05D001017 ORTHO05D001025 8.7e-08 60.8 41 75.6
Gohir.D04G104700 Gossypium hirsutum HOM05D001017 ORTHO05D001025 8.7e-08 60.8 41 75.6
Duzib106G0355 Durio zibethinus HOM05D001017 ORTHO05D001025 2.5e-07 59.3 41 73.2
Gohir.D09G137900 Gossypium hirsutum HOM05D001017 ORTHO05D001025 2.5e-07 59.3 41 73.2
Gorai.006G158500 Gossypium raimondii HOM05D001017 ORTHO05D001025 2.5e-07 59.3 41 73.2
Rhsim03G0081900 Rhododendron simsii HOM05D001017 ORTHO05D001025 4.3e-07 58.5 37 73.0
Atru.chr1.638 Acer truncatum HOM05D001017 ORTHO05D001025 5.6e-07 58.2 40 72.5
Gohir.A09G136500 Gossypium hirsutum HOM05D001017 ORTHO05D001025 5.6e-07 58.2 41 70.7
Prupe.2G281900 Prunus persica HOM05D001017 ORTHO05D001025 5.6e-07 58.2 112 39.3
Thecc.05G080300 Theobroma cacao HOM05D001017 ORTHO05D001025 5.6e-07 58.2 41 70.7
Actinidia13555 Actinidia chinensis HOM05D001017 ORTHO05D001025 7.3e-07 57.8 112 38.4
CSS0021646 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 7.3e-07 57.8 41 70.7
COL.COLO4_29824 Corchorus olitorius HOM05D001017 ORTHO05D001025 7.3e-07 57.8 41 70.7
Dinv28536 Davidia involucrata HOM05D001017 ORTHO05D001025 7.3e-07 57.8 108 39.8
Aqoxy7G00624 Aquilegia oxysepala HOM05D001017 ORTHO05D001025 9.6e-07 57.4 108 38.9
Ca_08963_v3 Cicer arietinum L. HOM05D001017 ORTHO05D001025 9.6e-07 57.4 93 44.1
ECA238G0008 Erigeron canadensis HOM05D001017 ORTHO05D001025 1.3e-06 57.0 40 72.5
HanXRQChr06g0181591 Helianthus annuus HOM05D001017 ORTHO05D001025 1.3e-06 57.0 40 72.5
Hma1.2p1_0099F.1_g048930 Hydrangea macrophylla HOM05D001017 ORTHO05D001025 1.3e-06 57.0 108 38.9
Lsat_1_v5_gn_2_21500 Lactuca sativa HOM05D001017 ORTHO05D001025 1.3e-06 57.0 40 72.5
Sabra15G0144300 Salix brachista HOM05D001017 ORTHO05D001025 1.3e-06 57.0 40 70.0
SGA_v2.0_scaffold40G15414 Striga asiatica HOM05D001017 ORTHO05D001025 1.3e-06 57.0 41 68.3
unitig_8.g4135 Utricularia gibba HOM05D001017 ORTHO05D001025 1.3e-06 57.0 37 73.0
Actinidia11328 Actinidia chinensis HOM05D001017 ORTHO05D001025 1.6e-06 56.6 41 70.7
Cpa.g.sc3.274 Carica papaya HOM05D001017 ORTHO05D001025 1.6e-06 56.6 40 70.0
FvH4_7g28150 Fragaria vesca HOM05D001017 ORTHO05D001025 1.6e-06 56.6 45 66.7
FAN06G2121 Fragaria x ananassa HOM05D001017 ORTHO05D001025 1.6e-06 56.6 45 66.7
FAN10G2671 Fragaria x ananassa HOM05D001017 ORTHO05D001025 1.6e-06 56.6 45 66.7
HanXRQChr11g0351111 Helianthus annuus HOM05D001017 ORTHO05D001025 1.6e-06 56.6 41 68.3
Medtr7g103620 Medicago truncatula HOM05D001017 ORTHO05D001025 1.6e-06 56.6 40 72.5
RcHm_v2.0_Chr1g0375091 Rosa chinensis HOM05D001017 ORTHO05D001025 1.6e-06 56.6 45 66.7
Sed0026371 Sechium edule HOM05D001017 ORTHO05D001025 1.6e-06 56.6 45 68.9
vmacro07370 Vaccinium macrocarpon HOM05D001017 ORTHO05D001025 1.6e-06 56.6 35 74.3
Actinidia39879 Actinidia chinensis HOM05D001017 ORTHO05D001025 2.1e-06 56.2 41 70.7
CAN.G824.32 Capsicum annuum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
Cc06_g05150 Coffea canephora HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
Dinv19820 Davidia involucrata HOM05D001017 ORTHO05D001025 2.1e-06 56.2 44 72.7
Dinv21265 Davidia involucrata HOM05D001017 ORTHO05D001025 2.1e-06 56.2 47 66.0
ECA248G3062 Erigeron canadensis HOM05D001017 ORTHO05D001025 2.1e-06 56.2 41 65.9
Nitab4.5_0000132g0250 Nicotiana tabacum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
Nitab4.5_0005504g0040 Nicotiana tabacum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
Nitab4.5_0013330g0020 Nicotiana tabacum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
PSO478G2722 Papaver somniferum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 45 66.7
PSO782G5736 Papaver somniferum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 45 66.7
Peaxi162Scf00110g01814 Petunia axillaris HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
SalBow3G2455 Salvia bowleyana HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
Solyc09g009020.3 Solanum lycopersicum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
Sopen09g003760 Solanum pennellii HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
PGSC0003DMG402002721 Solanum tuberosum HOM05D001017 ORTHO05D001025 2.1e-06 56.2 37 75.7
arahy.Tifrunner.gnm1.ann1.7M2AWM Arachis hypogaea HOM05D001017 ORTHO05D001025 2.8e-06 55.8 40 67.5
arahy.Tifrunner.gnm1.ann1.ELJ55T Arachis hypogaea HOM05D001017 ORTHO05D001025 2.8e-06 55.8 40 67.5
MSTRG.19225 Avicennia marina HOM05D001017 ORTHO05D001025 2.8e-06 55.8 37 73.0
MSTRG.26654 Avicennia marina HOM05D001017 ORTHO05D001025 2.8e-06 55.8 37 73.0
CSS0039585 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 2.8e-06 55.8 108 38.0
CSS0045082 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 2.8e-06 55.8 108 38.0
CiPaw.10G004800 Carya illinoinensis HOM05D001017 ORTHO05D001025 2.8e-06 55.8 40 67.5
CBR_g48754 Chara braunii HOM05D001017 ORTHO05D001025 2.8e-06 55.8 55 54.5
CsaV3_6G040390 Cucumis sativus L. HOM05D001017 ORTHO05D001025 2.8e-06 55.8 67 49.3
Duzib205G0673 Durio zibethinus HOM05D001017 ORTHO05D001025 2.8e-06 55.8 41 68.3
Gohir.A07G039200 Gossypium hirsutum HOM05D001017 ORTHO05D001025 2.8e-06 55.8 40 67.5
Nn2g13984 Nelumbo nucifera HOM05D001017 ORTHO05D001025 2.8e-06 55.8 40 70.0
Potri.006G116800 Populus trichocarpa HOM05D001017 ORTHO05D001025 2.8e-06 55.8 44 65.9
Sabra06G0091200 Salix brachista HOM05D001017 ORTHO05D001025 2.8e-06 55.8 44 65.9
SGA_v2.0_scaffold75G24800 Striga asiatica HOM05D001017 ORTHO05D001025 2.8e-06 55.8 37 73.0
unitig_22.g5115 Utricularia gibba HOM05D001017 ORTHO05D001025 2.8e-06 55.8 37 73.0
CANSAT56G2919 Cannabis sativa HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
CANSAT56G4362 Cannabis sativa HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
CDE09G0444 Ceratophyllum demersum HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
COL.COLO4_14178 Corchorus olitorius HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
ECA232G2607 Erigeron canadensis HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
Gohir.D07G043400 Gossypium hirsutum HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
Gorai.001G046400 Gossypium raimondii HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
HanXRQChr01g0028341 Helianthus annuus HOM05D001017 ORTHO05D001025 3.6e-06 55.5 41 65.9
HanXRQChr16g0512701 Helianthus annuus HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
Lsat_1_v5_gn_2_129481 Lactuca sativa HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
Rhsim03G0171300 Rhododendron simsii HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
SHI12235 Sapria himalayana HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 72.5
Sed0010426 Sechium edule HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
TWI39G0049 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
TAR375G0781 Trochodendron aralioides HOM05D001017 ORTHO05D001025 3.6e-06 55.5 40 70.0
CiPaw.04G062700 Carya illinoinensis HOM05D001017 ORTHO05D001025 4.8e-06 55.1 37 73.0
Ca_25232_v3 Cicer arietinum L. HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 67.5
Haze_19529 Corylus avellana HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 67.5
Lj2g0007326 Lotus japonicus HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 67.5
MBI04_g35279_MAGBIO Magnolia biondii HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 67.5
MBI17_g30590_MAGBIO Magnolia biondii HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 70.0
MD01G1185500 Malus domestica HOM05D001017 ORTHO05D001025 4.8e-06 55.1 108 38.0
TWI53G0609 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 70.0
TWI74G0474 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 70.0
TWI77G0014 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 4.8e-06 55.1 40 70.0
Aqoxy2G01438 Aquilegia oxysepala HOM05D001017 ORTHO05D001025 6.2e-06 54.7 44 68.2
MSTRG.10349 Avicennia marina HOM05D001017 ORTHO05D001025 6.2e-06 54.7 37 73.0
ClCG04G009740 Citrullus lanatus HOM05D001017 ORTHO05D001025 6.2e-06 54.7 36 75.0
Ciclev10011726m.g Citrus clementina HOM05D001017 ORTHO05D001025 6.2e-06 54.7 44 65.9
Lsat_1_v5_gn_1_50300 Lactuca sativa HOM05D001017 ORTHO05D001025 6.2e-06 54.7 35 77.1
Lj2A128G36 Lonicera japonica HOM05D001017 ORTHO05D001025 6.2e-06 54.7 41 73.2
Lalb_Chr01g0018351 Lupinus albus HOM05D001017 ORTHO05D001025 6.2e-06 54.7 40 70.0
Lalb_Chr20g0112241 Lupinus albus HOM05D001017 ORTHO05D001025 6.2e-06 54.7 40 70.0
Lalb_Chr25g0288721 Lupinus albus HOM05D001017 ORTHO05D001025 6.2e-06 54.7 40 70.0
Manes.09G060608 Manihot esculenta HOM05D001017 ORTHO05D001025 6.2e-06 54.7 103 39.8
Medtr6g060570 Medicago truncatula HOM05D001017 ORTHO05D001025 6.2e-06 54.7 40 67.5
Nitab4.5_0001922g0070 Nicotiana tabacum HOM05D001017 ORTHO05D001025 6.2e-06 54.7 37 73.0
Nitab4.5_0010922g0010 Nicotiana tabacum HOM05D001017 ORTHO05D001025 6.2e-06 54.7 37 73.0
Peaxi162Scf00433g00096 Petunia axillaris HOM05D001017 ORTHO05D001025 6.2e-06 54.7 52 55.8
Potri.015G131100 Populus trichocarpa HOM05D001017 ORTHO05D001025 6.2e-06 54.7 40 67.5
SEGI_09330 Sequoiadendron giganteum HOM05D001017 ORTHO05D001025 6.2e-06 54.7 40 67.5
TAR369G0241 Trochodendron aralioides HOM05D001017 ORTHO05D001025 6.2e-06 54.7 44 68.2
vmacro06768 Vaccinium macrocarpon HOM05D001017 ORTHO05D001025 6.2e-06 54.7 36 75.0
GSVIVG01018517001 Vitis vinifera HOM05D001017 ORTHO05D001025 6.2e-06 54.7 108 38.0
Atru.chr8.1645 Acer truncatum HOM05D001017 ORTHO05D001025 8.1e-06 54.3 44 63.6
ATR0810G114 Amborella trichopoda HOM05D001017 ORTHO05D001025 8.1e-06 54.3 44 68.2
arahy.Tifrunner.gnm1.ann1.86EPEX Arachis hypogaea HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
arahy.Tifrunner.gnm1.ann1.AX840Y Arachis hypogaea HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
CBR_g12313 Chara braunii HOM05D001017 ORTHO05D001025 8.1e-06 54.3 55 52.7
CBR_g38698 Chara braunii HOM05D001017 ORTHO05D001025 8.1e-06 54.3 55 52.7
CBR_g38707 Chara braunii HOM05D001017 ORTHO05D001025 8.1e-06 54.3 55 52.7
DCAR_020782 Daucus carota HOM05D001017 ORTHO05D001025 8.1e-06 54.3 35 77.1
Glyma.03G190500 Glycine max HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
Glyma.19G190900 Glycine max HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
Lj1g0023079 Lotus japonicus HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
Lalb_Chr03g0033121 Lupinus albus HOM05D001017 ORTHO05D001025 8.1e-06 54.3 40 67.5
Lalb_Chr19g0131331 Lupinus albus HOM05D001017 ORTHO05D001025 8.1e-06 54.3 40 67.5
Manes.08G020200 Manihot esculenta HOM05D001017 ORTHO05D001025 8.1e-06 54.3 103 38.8
Os03g0248600 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 72.2
Phvul.001G186100 Phaseolus vulgaris HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
Psat3g036800 Pisum sativum HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
Prupe.7G118700 Prunus persica HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 72.2
TPR.G28360 Trifolium pratense HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
TPR.G35255 Trifolium pratense HOM05D001017 ORTHO05D001025 8.1e-06 54.3 58 53.4
VMungo0464G1289 Vigna mungo HOM05D001017 ORTHO05D001025 8.1e-06 54.3 40 67.5
VMungo1383G1262 Vigna mungo HOM05D001017 ORTHO05D001025 8.1e-06 54.3 36 75.0
Zm00001eb026940 Zea mays HOM05D001017 ORTHO05D001025 8.1e-06 54.3 51 56.9
Zm00001eb377870 Zea mays HOM05D001017 ORTHO05D001025 8.1e-06 54.3 44 68.2


User provided reference genes

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