Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 6.8e-106 387.5 217 100.0
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 3.1e-103 378.6 217 91.2
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 7.8e-78 294.3 184 84.8
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.6e-75 286.6 214 72.0
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 6.4e-72 274.6 217 69.6
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.4e-66 256.9 193 75.1
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 3.8e-64 248.8 218 74.8
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 8.4e-64 247.7 219 63.0
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 7.8e-62 241.1 227 61.2
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 3.9e-61 238.8 217 60.4
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 5.1e-61 238.4 222 61.7
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 9.6e-60 234.2 217 60.8
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 7.1e-55 218.0 204 66.2
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.4e-50 203.8 203 56.7
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 5.1e-45 185.3 207 48.8
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 2.8e-43 179.5 214 48.1
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 4.8e-43 178.7 229 46.7
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.1e-42 177.6 208 48.6
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.4e-42 176.4 210 47.1
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 4.0e-42 175.6 218 45.0
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 4.0e-42 175.6 215 46.5
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 3.4e-41 172.6 205 47.8
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 4.5e-41 172.2 212 49.5
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 5.8e-41 171.8 205 49.8
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 5.8e-41 171.8 211 46.9
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 9.9e-41 171.0 220 45.9
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 9.9e-41 171.0 221 44.3
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 2.2e-40 169.9 215 44.7
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 2.9e-40 169.5 177 52.5
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 6.4e-40 168.3 220 45.9
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 1.4e-39 167.2 212 46.2
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.9e-39 166.8 194 47.9
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 2.4e-39 166.4 206 46.6
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 4.2e-39 165.6 223 43.9
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 5.5e-39 165.2 221 42.5
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 7.1e-39 164.9 230 43.9
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 9.3e-39 164.5 212 43.9
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 9.3e-39 164.5 212 43.9
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.6e-38 163.7 197 48.7
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 2.7e-38 162.9 192 48.4
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 2.7e-38 162.9 178 49.4
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 2.7e-38 162.9 220 44.1
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 3.5e-38 162.5 219 43.8
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 6.0e-38 161.8 228 43.0
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 1.0e-37 161.0 220 42.7
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 1.8e-37 160.2 210 43.3
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 1.8e-37 160.2 214 44.4
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 2.3e-37 159.8 228 42.5
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 2.3e-37 159.8 222 43.2
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 2.3e-37 159.8 179 48.6
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.9e-37 159.1 205 44.4
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 6.7e-37 158.3 176 50.6
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 8.7e-37 157.9 205 44.4
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 8.7e-37 157.9 180 49.4
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.1e-36 157.5 176 48.3
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 1.5e-36 157.1 191 50.3
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 1.9e-36 156.8 209 45.9
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 1.9e-36 156.8 198 45.5
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 1.9e-36 156.8 183 47.0
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.9e-36 156.8 218 42.2
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.3e-36 156.0 176 47.7
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.3e-36 156.0 205 44.4
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 5.6e-36 155.2 192 45.3
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 1.3e-35 154.1 217 43.3
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.3e-35 154.1 225 40.9
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 2.1e-35 153.3 180 48.3
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 2.8e-35 152.9 209 46.9
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 2.8e-35 152.9 199 45.2
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.1e-34 151.0 216 45.8
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 1.4e-34 150.6 198 43.9
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 3.1e-34 149.4 215 43.3
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 4.0e-34 149.1 99 73.7
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 3.4e-33 146.0 174 46.6
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.3e-32 144.1 197 47.7
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 2.2e-32 143.3 222 43.7
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 2.5e-31 139.8 178 44.4
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 5.5e-31 138.7 170 47.1
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 1.6e-30 137.1 213 41.3
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 2.1e-30 136.7 174 44.8
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 3.5e-30 136.0 81 90.1
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 3.5e-30 136.0 81 90.1
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 3.3e-28 129.4 164 47.0
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 7.4e-28 128.3 175 43.4
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 1.8e-26 123.6 209 40.7
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.8e-26 123.6 260 36.9
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.2e-25 120.9 183 41.5
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 5.9e-25 118.6 189 39.2
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 5.9e-25 118.6 171 42.1
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 7.6e-25 118.2 174 41.4
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 1.0e-24 117.9 159 45.9
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 1.0e-24 117.9 202 38.6
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 3.8e-24 115.9 148 50.0
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.8e-24 115.9 161 41.6
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 3.8e-24 115.9 194 38.1
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 3.8e-24 115.9 151 46.4
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 5.0e-24 115.5 212 43.9
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 2.5e-23 113.2 192 37.5
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 4.2e-23 112.5 141 46.8
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 7.2e-23 111.7 160 41.9
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 4.6e-22 109.0 303 29.4
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 6.1e-22 108.6 141 44.7
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.0e-21 107.8 174 39.1
BcaC07g38074 Brassica carinata HOM05D020738 ORTHO05D008451 3.3e-20 102.8 99 57.6
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 3.3e-20 102.8 207 41.1
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 9.7e-20 101.3 141 41.1
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.5e-17 94.0 189 33.9
BcaB02g10960 Brassica carinata HOM05D000397 ORTHO05D000492 5.9e-17 92.0 58 81.0
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 1.6e-14 84.0 153 39.2
BcaB01g02975 Brassica carinata HOM05D020738 ORTHO05D008451 3.0e-13 79.7 141 41.8
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.3e-12 76.3 78 48.7
BcaB08g34581 Brassica carinata HOM05D020738 ORTHO05D008451 9.7e-12 74.7 141 42.6
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 9.7e-12 74.7 151 34.4
BolC9t54178H Brassica oleracea HOM05D020738 ORTHO05D031827 2.2e-11 73.6 138 41.3
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 2.8e-11 73.2 164 31.1
BcaC04g23032 Brassica carinata HOM05D020738 ORTHO05D031827 8.2e-11 71.6 138 39.1
CARHR292590 Cardamine hirsuta HOM05D007009 ORTHO05D008451 1.9e-07 60.5 59 62.7
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 9.4e-07 58.2 108 40.7


User provided reference genes

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