Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46389 Brassica carinata HOM05D012065 ORTHO05D014121 4.1e-139 498.0 248 100.0
C03p44440 Brassica napus HOM05D012065 ORTHO05D014121 5.1e-33 145.6 107 71.0
BcaC08g43090 Brassica carinata HOM05D012065 ORTHO05D014121 1.3e-28 131.0 108 65.7
C06p03490 Brassica napus HOM05D012065 ORTHO05D014121 1.3e-28 131.0 108 65.7
C01p26540 Brassica napus HOM05D012065 ORTHO05D014121 1.7e-28 130.6 108 64.8
C05p23270 Brassica napus HOM05D012065 ORTHO05D014121 4.6e-26 122.5 107 63.6
BraSC35t46020Z Brassica rapa HOM05D012065 ORTHO05D014121 9.7e-24 114.8 86 67.4
C01p43090 Brassica napus HOM05D012065 ORTHO05D014121 7.7e-21 105.1 108 57.4
BolC3t18698H Brassica oleracea HOM05D012065 ORTHO05D014121 5.0e-20 102.4 109 54.1
A04p27420 Brassica napus HOM05D012065 ORTHO05D014121 1.1e-19 101.3 93 60.2
BcaB06g25897 Brassica carinata HOM05D001053 ORTHO05D007087 2.5e-19 100.1 176 39.8
BcaC05g28608 Brassica carinata HOM05D001053 ORTHO05D007087 4.6e-18 95.9 176 38.6
C05p47110 Brassica napus HOM05D001053 ORTHO05D007087 4.6e-18 95.9 176 38.6
BolC5t33437H Brassica oleracea HOM05D001053 ORTHO05D007087 4.6e-18 95.9 176 38.6
Sp3g16610 Schrenkiella parvula HOM05D001053 ORTHO05D007087 2.0e-16 90.5 204 34.8
A05p31110 Brassica napus HOM05D001053 ORTHO05D007087 4.3e-16 89.4 177 36.7
BraA05t21952Z Brassica rapa HOM05D001053 ORTHO05D007087 4.3e-16 89.4 177 36.7
A08p08020 Brassica napus HOM05D012065 ORTHO05D014121 9.7e-16 88.2 43 86.0
Thhalv10020421m.g Eutrema salsugineum HOM05D001053 ORTHO05D007087 6.3e-15 85.5 176 36.4
BolC3t18699H Brassica oleracea HOM05D012065 ORTHO05D014121 1.1e-14 84.7 41 92.7
CARHR093900 Cardamine hirsuta HOM05D001053 ORTHO05D007087 1.4e-14 84.3 176 36.4
BcaC04g22844 Brassica carinata HOM05D012065 ORTHO05D014121 1.8e-14 84.0 41 92.7
Carub.0003s1831 Capsella rubella HOM05D001053 ORTHO05D007087 5.0e-12 75.9 177 33.9
Aa31LG8G5390 Aethionema arabicum HOM05D001053 ORTHO05D007087 1.1e-11 74.7 192 32.3
THA.LOC104820404 Tarenaya hassleriana HOM05D001053 ORTHO05D007087 1.9e-11 73.9 203 32.0
AL3G31840 Arabidopsis lyrata HOM05D001053 ORTHO05D007087 2.5e-11 73.6 177 34.5
AT3G18520 Arabidopsis thaliana HOM05D001053 ORTHO05D007087 3.2e-11 73.2 177 33.9
C09p14180 Brassica napus HOM05D024713 ORTHO05D000065 2.7e-10 70.1 50 66.0
A07p03280 Brassica napus HOM05D035563 ORTHO05D000065 3.3e-08 63.2 58 51.7
BcaC08g43190 Brassica carinata HOM05D000313 ORTHO05D000065 4.4e-08 62.8 50 58.0
C04p33330 Brassica napus HOM05D000313 ORTHO05D000065 7.4e-08 62.0 50 56.0
BcaC06g34088 Brassica carinata HOM05D000290 ORTHO05D027172 9.7e-08 61.6 45 62.2
C07p32840 Brassica napus HOM05D000290 ORTHO05D027172 9.7e-08 61.6 45 62.2
BolC1t03884H Brassica oleracea HOM05D010157 ORTHO05D017615 9.7e-08 61.6 57 47.4
BolC7t43798H Brassica oleracea HOM05D000290 ORTHO05D027172 9.7e-08 61.6 45 62.2
Thhalv10002234m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 9.7e-08 61.6 50 60.0
BcaC01g03696 Brassica carinata HOM05D001053 ORTHO05D007087 1.7e-07 60.8 163 31.3
C03p49480 Brassica napus HOM05D001053 ORTHO05D007087 1.7e-07 60.8 163 31.3
BolC3t17246H Brassica oleracea HOM05D001053 ORTHO05D007087 1.7e-07 60.8 163 31.3
A03p62560 Brassica napus HOM05D010157 ORTHO05D017615 2.2e-07 60.5 57 45.6
BcaB04g17856 Brassica carinata HOM05D000313 ORTHO05D000065 2.8e-07 60.1 94 38.3
BcaC01g04545 Brassica carinata HOM05D000313 ORTHO05D000065 2.8e-07 60.1 49 55.1
C03p49020 Brassica napus HOM05D000313 ORTHO05D000065 2.8e-07 60.1 50 58.0
BolC3t17179H Brassica oleracea HOM05D000313 ORTHO05D000065 2.8e-07 60.1 50 58.0
THA.LOC104813725 Tarenaya hassleriana HOM05D000313 ORTHO05D000065 2.8e-07 60.1 43 60.5
BcaB03g15004 Brassica carinata HOM05D000313 ORTHO05D000065 3.7e-07 59.7 49 53.1
BcaB08g35222 Brassica carinata HOM05D000313 ORTHO05D000065 4.8e-07 59.3 50 56.0
BolC4t22110H Brassica oleracea HOM05D000313 ORTHO05D000065 6.3e-07 58.9 48 54.2
Thhalv10005644m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 6.3e-07 58.9 43 62.8
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 8.2e-07 58.5 81 43.2
BcaB02g11204 Brassica carinata HOM05D000313 ORTHO05D000065 1.1e-06 58.2 48 54.2
BcaB02g11419 Brassica carinata HOM05D000313 ORTHO05D001242 1.1e-06 58.2 48 54.2
C05p18010 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-06 58.2 49 55.1
C09p33280 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-06 58.2 48 54.2
BolC2t10031H Brassica oleracea HOM05D003545 ORTHO05D011382 1.1e-06 58.2 53 47.2
BolC9t56164H Brassica oleracea HOM05D000313 ORTHO05D000065 1.1e-06 58.2 48 54.2
BcaC05g27737 Brassica carinata HOM05D000313 ORTHO05D000065 1.4e-06 57.8 48 52.1
BcaC09g49275 Brassica carinata HOM05D000313 ORTHO05D000065 1.4e-06 57.8 48 52.1
BcaNung04477 Brassica carinata HOM05D000313 ORTHO05D000065 1.4e-06 57.8 44 56.8
A02p13460 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-06 57.8 52 50.0
C04p06280 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-06 57.8 50 54.0
C05p37250 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-06 57.8 48 52.1
C09p44110 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-06 57.8 48 52.1
BraA01t04033Z Brassica rapa HOM05D000313 ORTHO05D000065 1.4e-06 57.8 48 52.1
BcaC01g04173 Brassica carinata HOM05D000313 ORTHO05D000065 1.8e-06 57.4 48 52.1
BcaC04g20219 Brassica carinata HOM05D000313 ORTHO05D000065 1.8e-06 57.4 49 53.1
A03p36970 Brassica napus HOM05D000313 ORTHO05D000065 1.8e-06 57.4 49 53.1
A03p45920 Brassica napus HOM05D000313 ORTHO05D000065 1.8e-06 57.4 48 52.1
C03p44260 Brassica napus HOM05D000313 ORTHO05D000065 1.8e-06 57.4 48 52.1
BolC3t16695H Brassica oleracea HOM05D000313 ORTHO05D000065 1.8e-06 57.4 48 52.1
BcaB04g17117 Brassica carinata HOM05D000313 ORTHO05D000065 2.4e-06 57.0 78 38.5
BcaC02g12357 Brassica carinata HOM05D000313 ORTHO05D000065 2.4e-06 57.0 48 52.1
BcaC06g35177 Brassica carinata HOM05D000313 ORTHO05D000065 2.4e-06 57.0 49 53.1
C05p13780 Brassica napus HOM05D010157 ORTHO05D101104 2.4e-06 57.0 59 52.5
C05p17990 Brassica napus HOM05D000313 ORTHO05D000065 2.4e-06 57.0 48 52.1
C08p14050 Brassica napus HOM05D015593 ORTHO05D000065 2.4e-06 57.0 51 49.0
BolC5t30506H Brassica oleracea HOM05D000313 ORTHO05D000065 2.4e-06 57.0 48 52.1
BolC7t42406H Brassica oleracea HOM05D000313 ORTHO05D000065 2.4e-06 57.0 49 53.1
BcaC02g08920 Brassica carinata HOM05D000313 ORTHO05D000065 3.1e-06 56.6 48 52.1
BcaC08g44117 Brassica carinata HOM05D000313 ORTHO05D000065 3.1e-06 56.6 48 52.1
A03p61810 Brassica napus HOM05D000313 ORTHO05D000065 3.1e-06 56.6 48 50.0
A10p12060 Brassica napus HOM05D000313 ORTHO05D000065 3.1e-06 56.6 48 52.1
BolC4t26494H Brassica oleracea HOM05D000313 ORTHO05D000065 3.1e-06 56.6 48 52.1
BraA09t39507Z Brassica rapa HOM05D000313 ORTHO05D000065 3.1e-06 56.6 48 52.1
BcaB07g32276 Brassica carinata HOM05D000313 ORTHO05D000065 4.1e-06 56.2 48 54.2
BcaB07g33660 Brassica carinata HOM05D000313 ORTHO05D001242 4.1e-06 56.2 48 52.1
BcaC03g16075 Brassica carinata HOM05D000022 ORTHO05D013684 4.1e-06 56.2 48 50.0
A07p02720 Brassica napus HOM05D012065 ORTHO05D014121 4.1e-06 56.2 36 86.1
BolC2t09854H Brassica oleracea HOM05D000313 ORTHO05D000065 4.1e-06 56.2 48 50.0
AL1G39460 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 5.3e-06 55.8 44 54.5
AL6G43140 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 5.3e-06 55.8 44 54.5
BcaC05g27392 Brassica carinata HOM05D000313 ORTHO05D000065 5.3e-06 55.8 50 52.0
BcaC06g36665 Brassica carinata HOM05D000313 ORTHO05D000065 5.3e-06 55.8 48 52.1
BcaC06g36731 Brassica carinata HOM05D000313 ORTHO05D000065 5.3e-06 55.8 48 52.1
A05p21270 Brassica napus HOM05D000313 ORTHO05D000065 5.3e-06 55.8 48 52.1
C05p31790 Brassica napus HOM05D029461 ORTHO05D040388 5.3e-06 55.8 34 73.5
BolC4t23669H Brassica oleracea HOM05D000313 ORTHO05D000065 5.3e-06 55.8 48 50.0
BolC5t31907H Brassica oleracea HOM05D029461 ORTHO05D032793 5.3e-06 55.8 34 73.5
BolC7t40506H Brassica oleracea HOM05D000313 ORTHO05D000065 5.3e-06 55.8 48 52.1
BolC7t40570H Brassica oleracea HOM05D000313 ORTHO05D000065 5.3e-06 55.8 48 52.1
BraA05t21034Z Brassica rapa HOM05D000313 ORTHO05D000065 5.3e-06 55.8 48 52.1
A09p23680 Brassica napus HOM05D000313 ORTHO05D000065 7.0e-06 55.5 48 50.0
A09p47000 Brassica napus HOM05D000313 ORTHO05D000065 7.0e-06 55.5 48 50.0
BraA09t40166Z Brassica rapa HOM05D000313 ORTHO05D000065 7.0e-06 55.5 48 50.0
BcaC02g10783 Brassica carinata HOM05D000313 ORTHO05D000065 9.1e-06 55.1 49 53.1
BcaC03g15037 Brassica carinata HOM05D010157 ORTHO05D017615 9.1e-06 55.1 57 47.4
C04p21440 Brassica napus HOM05D000313 ORTHO05D000065 9.1e-06 55.1 48 50.0
C04p25130 Brassica napus HOM05D000313 ORTHO05D000065 9.1e-06 55.1 49 53.1
C04p40410 Brassica napus HOM05D000313 ORTHO05D000065 9.1e-06 55.1 52 50.0
C07p20830 Brassica napus HOM05D000313 ORTHO05D000065 9.1e-06 55.1 48 52.1
BolC1t03286H Brassica oleracea HOM05D014428 ORTHO05D021653 9.1e-06 55.1 60 48.3
BolC2t08659H Brassica oleracea HOM05D010157 ORTHO05D017615 9.1e-06 55.1 57 47.4
BolC3t17676H Brassica oleracea HOM05D000313 ORTHO05D000065 9.1e-06 55.1 50 52.0
BolC4t24017H Brassica oleracea HOM05D000313 ORTHO05D000065 9.1e-06 55.1 49 53.1
BolC5t32497H Brassica oleracea HOM05D010157 ORTHO05D017615 9.1e-06 55.1 50 54.0
BraA06t25243Z Brassica rapa HOM05D010357 ORTHO05D000065 9.1e-06 55.1 49 53.1
BraA09t37737Z Brassica rapa HOM05D000313 ORTHO05D000065 9.1e-06 55.1 49 55.1


User provided reference genes

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