Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 2.5e-59 231.9 113 100.0
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 2.5e-59 231.9 113 100.0
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 5.5e-43 177.6 114 82.5
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 6.8e-41 170.6 113 79.6
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 5.4e-38 161.0 114 77.2
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 5.4e-38 161.0 114 75.4
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 5.5e-35 151.0 114 73.7
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 7.5e-32 140.6 116 70.7
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.8e-31 138.7 113 69.9
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.8e-30 136.0 114 67.5
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.9e-27 125.9 115 66.1
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.0e-20 102.1 112 55.4
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 2.0e-16 89.4 124 51.6
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 9.8e-16 87.0 120 47.5
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.3e-15 86.7 116 46.6
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.9e-15 85.5 121 43.8
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 8.3e-15 84.0 121 43.8
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 2.4e-14 82.4 127 44.1
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 7.0e-14 80.9 123 43.1
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.2e-13 80.1 135 43.7
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.6e-13 79.7 115 48.7
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 2.0e-13 79.3 122 45.1
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 2.7e-13 79.0 116 45.7
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 3.5e-13 78.6 114 45.6
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 3.5e-13 78.6 120 45.8
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.5e-13 78.6 122 41.8
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 6.0e-13 77.8 115 47.0
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 7.8e-13 77.4 118 45.8
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 7.8e-13 77.4 115 44.3
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.3e-12 76.6 120 45.8
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.3e-12 75.9 120 43.3
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 3.0e-12 75.5 124 42.7
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 3.0e-12 75.5 119 43.7
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 3.0e-12 75.5 121 45.5
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 5.0e-12 74.7 127 40.2
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 5.0e-12 74.7 121 42.1
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.1e-11 73.6 118 44.1
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 1.5e-11 73.2 134 40.3
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.5e-11 73.2 116 44.8
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 1.9e-11 72.8 113 45.1
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.9e-11 72.8 116 44.0
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 2.5e-11 72.4 113 41.6
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 9.5e-11 70.5 119 40.3
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.6e-10 69.7 57 61.4
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.1e-10 69.3 114 43.9
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.1e-10 69.3 114 43.9
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.8e-10 68.9 113 39.8
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 2.8e-10 68.9 117 43.6
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.6e-10 68.6 114 43.0
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 4.7e-10 68.2 118 40.7
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 4.7e-10 68.2 111 38.7
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 6.2e-10 67.8 114 41.2
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 6.2e-10 67.8 105 46.7
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 8.1e-10 67.4 115 44.3
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 1.1e-09 67.0 109 40.4
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-09 67.0 117 42.7
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.3e-09 65.9 115 38.3
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.1e-09 65.5 115 38.3
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 3.1e-09 65.5 55 60.0
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 3.1e-09 65.5 124 37.1
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 4.0e-09 65.1 118 40.7
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.8e-09 64.3 115 37.4
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 6.8e-09 64.3 74 54.1
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 8.9e-09 63.9 60 56.7
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 8.9e-09 63.9 117 39.3
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.5e-08 63.2 102 44.1
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 2.0e-08 62.8 117 40.2
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.6e-08 62.4 118 39.0
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.6e-08 62.4 103 40.8
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 2.6e-08 62.4 117 42.7
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 2.6e-08 62.4 55 58.2
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 3.4e-08 62.0 68 52.9
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.4e-08 62.0 78 48.7
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.4e-08 61.6 117 40.2
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 4.4e-08 61.6 118 39.0
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 5.8e-08 61.2 56 57.1
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 5.8e-08 61.2 115 40.9
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 5.8e-08 61.2 118 40.7
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 7.5e-08 60.8 86 46.5
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 9.9e-08 60.5 98 46.9
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 9.9e-08 60.5 114 42.1
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.3e-07 60.1 57 56.1
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 1.7e-07 59.7 69 47.8
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.2e-07 59.3 133 35.3
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.9e-07 58.9 121 40.5
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 2.9e-07 58.9 72 50.0
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.9e-07 58.9 118 40.7
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.7e-07 58.5 124 40.3
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.4e-07 57.8 104 40.4
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 8.3e-07 57.4 116 39.7
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.1e-06 57.0 114 41.2
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.1e-06 57.0 127 36.2
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.1e-06 57.0 121 39.7
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.4e-06 56.6 49 61.2
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.4e-06 56.6 49 61.2
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.4e-06 56.6 115 40.0
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 1.9e-06 56.2 49 59.2
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 2.4e-06 55.8 117 39.3
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 4.1e-06 55.1 98 39.8
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 7.1e-06 54.3 122 35.2
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 7.1e-06 54.3 122 37.7
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 9.2e-06 53.9 117 41.0


User provided reference genes

Program Settings