Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 4.0e-67 258.1 141 100.0
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 6.0e-63 244.2 144 95.1
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 3.4e-58 228.4 143 90.9
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 3.4e-58 228.4 143 90.9
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 1.7e-57 226.1 143 90.2
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 3.8e-57 224.9 143 90.2
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 3.8e-57 224.9 143 90.2
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 5.1e-54 214.5 149 81.2
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 2.5e-53 212.2 148 79.7
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.4e-51 206.5 150 82.7
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 9.0e-51 203.8 148 77.0
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 1.5e-50 203.0 148 77.0
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 1.5e-50 203.0 148 77.0
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 2.0e-50 202.6 148 78.4
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 5.8e-50 201.1 145 78.6
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 5.8e-50 201.1 145 78.6
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 1.9e-48 196.1 145 76.6
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 3.2e-48 195.3 147 76.2
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 3.2e-48 195.3 147 76.2
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 3.2e-48 195.3 147 76.2
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 1.9e-45 186.0 146 76.0
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 5.6e-45 184.5 153 76.5
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 1.8e-43 179.5 151 73.5
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 1.9e-37 159.5 147 68.7
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 1.8e-35 152.9 154 61.0
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.2e-33 146.0 164 57.9
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 6.3e-20 101.3 162 50.0
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 2.4e-19 99.4 171 46.8
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 3.1e-19 99.0 166 48.2
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 5.3e-19 98.2 154 48.7
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 6.9e-19 97.8 152 46.1
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 9.1e-19 97.4 154 48.1
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 1.2e-18 97.1 165 45.5
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 2.0e-18 96.3 153 47.7
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.0e-17 94.0 159 41.5
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 1.0e-17 94.0 159 41.5
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 1.3e-17 93.6 160 45.6
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 1.7e-17 93.2 145 44.8
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 8.5e-17 90.9 164 44.5
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 1.9e-16 89.7 150 42.0
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 2.5e-16 89.4 159 40.3
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 4.2e-16 88.6 157 44.6
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 7.2e-16 87.8 166 42.2
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 9.4e-16 87.4 146 47.3
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 2.7e-15 85.9 161 42.2
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 6.1e-15 84.7 146 42.5
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.3e-14 82.8 155 40.0
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 3.9e-14 82.0 162 47.5
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.9e-14 82.0 153 39.9
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 6.7e-14 81.3 145 41.4
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 6.7e-14 81.3 144 44.4
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 8.8e-14 80.9 146 43.8
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 1.1e-13 80.5 151 43.0
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 1.5e-13 80.1 161 39.8
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 2.0e-13 79.7 162 41.4
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 2.0e-13 79.7 144 43.1
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.7e-13 78.2 143 42.0
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 5.7e-13 78.2 145 42.1
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 5.7e-13 78.2 150 40.7
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 7.4e-13 77.8 144 43.1
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 9.7e-13 77.4 148 43.2
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 1.7e-12 76.6 153 40.5
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 1.7e-12 76.6 150 39.3
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 1.7e-12 76.6 144 43.1
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 2.2e-12 76.3 154 39.0
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.2e-12 76.3 154 39.6
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 2.8e-12 75.9 173 39.3
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 3.7e-12 75.5 169 39.6
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 3.7e-12 75.5 153 41.8
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 3.7e-12 75.5 153 41.8
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 4.8e-12 75.1 173 36.4
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 4.8e-12 75.1 169 40.8
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 1.4e-11 73.6 164 39.6
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.8e-11 73.2 138 41.3
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 1.8e-11 73.2 162 41.4
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 1.8e-11 73.2 168 38.7
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 1.8e-11 73.2 157 40.1
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 3.1e-11 72.4 165 37.6
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 4.1e-11 72.0 155 36.1
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 4.1e-11 72.0 159 40.9
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 5.3e-11 71.6 160 38.8
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 5.3e-11 71.6 161 39.8
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 7.0e-11 71.2 158 39.2
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 7.0e-11 71.2 100 46.0
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 9.1e-11 70.9 166 39.2
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 9.1e-11 70.9 149 41.6
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 1.6e-10 70.1 159 39.6
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.0e-10 69.7 164 37.8
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 2.0e-10 69.7 159 39.6
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.6e-10 69.3 152 37.5
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 3.5e-10 68.9 165 37.6
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 3.5e-10 68.9 159 37.7
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 4.5e-10 68.6 152 40.1
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 4.5e-10 68.6 170 36.5
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 7.7e-10 67.8 162 38.9
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 7.7e-10 67.8 153 39.2
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-09 67.4 164 37.2
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-09 67.4 163 38.0
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-09 67.4 164 38.4
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-09 67.4 84 51.2
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-09 67.4 164 37.8
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 1.3e-09 67.0 163 36.8
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 1.3e-09 67.0 166 36.7
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 1.3e-09 67.0 157 40.1
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.2e-09 66.2 164 39.0
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 2.2e-09 66.2 155 36.1
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 2.2e-09 66.2 161 34.8
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.2e-09 66.2 162 39.5
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 2.9e-09 65.9 170 34.1
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 2.9e-09 65.9 152 39.5
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 3.8e-09 65.5 89 48.3
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 5.0e-09 65.1 165 35.8
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 6.5e-09 64.7 156 37.8
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 6.5e-09 64.7 163 37.4
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 6.5e-09 64.7 156 34.6
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 6.5e-09 64.7 156 34.6
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 8.5e-09 64.3 165 38.2
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 8.5e-09 64.3 158 34.2
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 8.5e-09 64.3 173 36.4
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 8.5e-09 64.3 162 35.2
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 1.1e-08 63.9 163 39.3
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 1.1e-08 63.9 160 35.6
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 1.1e-08 63.9 166 36.1
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 1.5e-08 63.5 169 34.9
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 1.5e-08 63.5 172 37.2
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 1.5e-08 63.5 173 37.6
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.5e-08 63.5 170 35.9
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 1.5e-08 63.5 152 42.8
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 1.5e-08 63.5 157 35.7
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 1.5e-08 63.5 161 36.0
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 1.9e-08 63.2 188 36.2
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 1.9e-08 63.2 164 39.0
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 1.9e-08 63.2 155 36.1
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 1.9e-08 63.2 146 37.0
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 2.5e-08 62.8 172 36.0
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 2.5e-08 62.8 160 35.0
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.5e-08 62.8 162 38.9
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 2.5e-08 62.8 173 35.8
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.2e-08 62.4 164 36.6
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 3.2e-08 62.4 92 46.7
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.2e-08 62.4 151 39.7
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.2e-08 62.0 143 38.5
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 4.2e-08 62.0 161 34.2
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 5.5e-08 61.6 169 35.5
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 7.2e-08 61.2 158 39.9
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 7.2e-08 61.2 146 34.9
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 9.4e-08 60.8 161 33.5
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 9.4e-08 60.8 164 36.6
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 9.4e-08 60.8 174 35.1
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 9.4e-08 60.8 157 37.6
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 1.2e-07 60.5 164 34.8
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 1.2e-07 60.5 170 35.3
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 1.2e-07 60.5 158 32.3
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 1.6e-07 60.1 163 38.0
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.6e-07 60.1 163 38.0
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 1.6e-07 60.1 170 35.9
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 1.6e-07 60.1 155 36.8
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 2.1e-07 59.7 48 62.5
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 2.1e-07 59.7 165 36.4
Lalb_Chr06g0165891 Lupinus albus HOM05D003134 ORTHO05D003500 2.7e-07 59.3 58 60.3
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 3.6e-07 58.9 165 31.5
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 3.6e-07 58.9 166 33.7
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 3.6e-07 58.9 95 47.4
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 4.7e-07 58.5 156 39.1
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 6.1e-07 58.2 172 34.3
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 8.0e-07 57.8 170 34.7
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 8.0e-07 57.8 171 33.3
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 8.0e-07 57.8 166 33.1
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 8.0e-07 57.8 166 33.1
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 8.0e-07 57.8 181 34.8
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.4e-06 57.0 173 34.7
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 1.4e-06 57.0 170 34.1
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 1.8e-06 56.6 161 37.3
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 2.3e-06 56.2 171 32.7
CiPaw.04G043700 Carya illinoinensis HOM05D003134 ORTHO05D003500 2.3e-06 56.2 175 34.9
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 2.3e-06 56.2 158 36.7
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 3.0e-06 55.8 184 33.7
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 4.0e-06 55.5 164 34.8
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 4.0e-06 55.5 169 36.7
Nn4g23933 Nelumbo nucifera HOM05D003134 ORTHO05D003500 5.2e-06 55.1 161 32.3
CARHR059040 Cardamine hirsuta HOM05D003134 ORTHO05D003500 8.8e-06 54.3 173 32.9
Haze_24605 Corylus avellana HOM05D003134 ORTHO05D003500 8.8e-06 54.3 44 65.9


User provided reference genes

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